Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq44 122 9e-23 seq456 120 3e-22 seq12 116 4e-21 seq102 113 5e-20 seq453 100 3e-16 seq27 93.3 4e-14 seq141 89.7 5e-13 seq404 82.4 8e-11 seq105 82.4 8e-11 >seq44 Length=10323257 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| ||||||||| | || || || | Sbjct 7627018 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCA 7626959 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | || || || || |||||| | ||| Sbjct 7626958 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCTGAC 7626899 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || ||||| |||||||| || | ||||| || || ||| Sbjct 7626898 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 7626839 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||||| ||| | || |||||||| || || || ||||||| || Sbjct 7626838 AACATTCAGAAAGAGTCGACCCTGCATCTGGTCTTTCGTCTGAGGGGTGG 7626789 >seq456 Length=605306 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| | || |||| || || || |||||||| Sbjct 383288 GACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAA 383347 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||| |||||||||||||||||| ||| |||| ||||| || || | Sbjct 383348 GATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTT 383407 Query 40903 CGCTTGAGGGGCGG 40916 ||||||||||| || Sbjct 383408 CGCTTGAGGGGAGG 383421 >seq12 Length=16976894 Score = 116 bits (128), Expect = 4e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || | |||||| |||||||| ||| ||| | ||| Sbjct 6395597 ATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCAGCCCAGT 6395656 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||| | |||| | ||||| ||||||||||| | ||||| Sbjct 6395657 GACACCATCGAAAACG-TCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCACCTGACCA 6395715 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA--CCCTCAACGACTAC 40866 ||| || || | | || |||||||||||||| | | |||| |||||| ||||| Sbjct 6395716 GCAGCGTCTGAGTTTTGCCGGCAAACAGCTGGAGAATGGCCGCACTCCCTCA--GACTAT 6395773 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || |||||||| ||| |||| ||||| | ||| | || || |||| ||| Sbjct 6395774 AATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTACGTCTGTGGGGTGGC 6395824 >seq102 Length=6558185 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || | |||||| ||||| || | | ||||| ||| Sbjct 2020283 ATGCAAATCTTCGTGAAGACACTGATGGGCAAGACCATTACACACAAGGTCGAGCCCAGT 2020224 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || |||| |||| | ||||| | ||||| || |||||||| |||| Sbjct 2020223 AACACCACTGATAACG-TCAAAGCTAAAATCCGAGACAAGGAAGGCATCCCACATGACCT 2020165 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||||||||||||||||| ||| | ||||| ||| |||||||| Sbjct 2020164 GCAGTGTCTGATTTTTGCGGGCAAACAGCTGGAGGACAATCGCACTCTCTCAGACTACAA 2020105 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||| ||| |||| ||||| Sbjct 2020104 CATTCAGAAAGAGTCCACTCTGCA 2020081 >seq453 Length=1760600 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||| || ||| | | || || |||||||| |||||||| | || ||| | ||| Sbjct 554807 ATGCGGATCTTCATGACGACCCTGACGGGCAAGACCATCACACTAGATGTCCAGCCCAGT 554748 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| || |||| |||| | | ||||| | ||||||||| | ||||| Sbjct 554747 GACACCACTGAAAAGGCCAAAGGTAAAA-TCCAAGACAAGGCGGGCATCCCACCTGACCA 554689 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || | | || |||||||||||||| || | | ||| ||| ||||||| Sbjct 554688 GCAGCGTCTGACTTTGGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGACTACAC 554629 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| ||| ||| ||||| Sbjct 554628 CATCCAGAAAGAGTGCACCCTGCA 554605 >seq27 Length=11214825 Score = 93.3 bits (102), Expect = 4e-14 Identities = 165/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC-ACC 40749 |||| || ||||| || || | || | || ||||||||| | || || |||||| | | Sbjct 501221 TGCAGATCTTCGTGAAGACCTTGACCGAGAAGACCATCACCCTGGAGGT-GAAGCCCAGC 501279 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| || ||| || || | || ||||||||||||||| | || || Sbjct 501280 GACACCACTGAGCACG-TCGAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGATCA 501338 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 | | || |||| || | ||||||||||| || | || || ||| |||||||| Sbjct 501339 AGAGAGGCTGATCTTTGCCAGGAAACAGCTGGAAGATGGGCACATCCTATCTGACTACAA 501398 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG-AGGGGCGGCGGCT 40921 ||||||||| ||| | || ||| | || || | ||||| ||||| || |||| Sbjct 501399 CATCCAGAAAGAGTCTACTCTGTACCTGGTCCTTTGCTTGAAGGGGAGGTGGCT 501452 >seq141 Length=4710130 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||| |||| || | | ||| || || ||||| |||||||| |||| ||||| ||| Sbjct 2829137 ATGTAAATCTTTATGATAACCCTGACCGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 2829196 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || || | ||| | ||||| | || | |||||||||| | ||||| Sbjct 2829197 GATGCCACTGAGAATGG-CAAAGCTAAAATCCAAGATGAGGAGGGCATCCTACCTGACCA 2829255 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||||||||||||||||| || | || ||| ||| | ||||||| Sbjct 2829256 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATG-GC-CACACTCTCCCACTACAA 2829313 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| ||||| | ||| | | || |||||||| Sbjct 2829314 TATCCAGAAAGAGTCCAC-CTGCACTTGGTGCTTGGTCTG-GGGGCGGC 2829360 >seq404 Length=3166660 Score = 82.4 bits (90), Expect = 8e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||| || || || || || || |||||||| |||||||| | || ||||| || || Sbjct 1028240 GCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCTCAGTGA 1028181 Query 40752 CAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 || | || ||||| || | | ||||| | ||||| ||||||||||| | || || Sbjct 1028180 CACCACTGAAAACG-TCGAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTTACTGGC 1028122 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | || || || | | |||| ||||| ||| || | || || ||| | ||| || | Sbjct 1028121 ATCGTCTGATTTTTGTGGGCGAACAGGTGGCGGATGGCCGAACTCTCTCAGTCTATAATA 1028062 Query 40871 TCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||| ||| |||| ||||| || ||| Sbjct 1028061 TCGAGAAAGAGTCCACCCTGCACCTGGTG 1028033 >seq105 Length=3566936 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || |||||| | || ||||||||||| ||||| || || || || |||||| || Sbjct 2106905 GAACCACTGCTGAGAGAAAACCCCCGCCGCTTCGTCATCTTTCCTATCGAATACCATGAT 2106964 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| ||||| || || || ||||| || || ||||| | ||||||||| Sbjct 2106965 ATTTGGCAGATGTATAAGAAAGCGGAGGCTTCCTTTTGGACAGCCGAGGAGGT 2107017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514986745977440