Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq54 109 4e-19 >seq54 Length=8220942 Score = 109 bits (120), Expect = 4e-19 Identities = 303/458 (66%), Gaps = 5/458 (1%) Strand=Plus/Plus Query 97007 TTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAG-AGCATCAATGTGATTCACA 97065 || |||||||||| | ||| | ||||||| | | || ||| ||| ||||||||| Sbjct 3751151 TTCGGAAAGGCCTTGTTTTTCACTGAAGCTGCATTTTCAGCAGC-TCAGTGTGATTCAGG 3751209 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 |||||||| | |||||| ||||||| | ||| || || || | || | | || Sbjct 3751210 TAAATGTGGGAATCTCCCAAAGTGTATACAAAATCACCTGGCCTCAGGTCCATAATTTGT 3751269 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 | |||||| | || || | || ||| | |||||||| || |||| | | ||| Sbjct 3751270 GTGATCATGTAGGTGAACAAGGAGTAGTTGGCAATGTTGAAGAGCACACACACGTCCACG 3751329 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTC 97245 || || | || || || | ||| || || ||||| |||| |||||| | ||| Sbjct 3751330 TCCACTAACCTCTGGTACA-CTGGCAAGACAGCTTACCATTTTCCACATAGGA-TGAGCA 3751387 Query 97246 AATA-CATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACAT 97304 || | ||||| | | | || |||| |||| || | |||||||||||||| Sbjct 3751388 AAGAGCATGATATGCAGATAAGACCATGAGAGGAAGATATTTTGGATTCCAAGCACACAG 3751447 Query 97305 CAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATC 97364 | |||||||| || ||||| |||| || |||| | |||||| || | ||| || Sbjct 3751448 GATAATTCTTCTGTCATCAGGGTTGGTGTTGATTGTATCAGTTATCTTTTTCAGTTGGTC 3751507 Query 97365 AACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCA 97424 || ||| | | ||||| || | | ||| |||||||| |||||||||||| | Sbjct 3751508 TACTGCTTGACTAGAATAATCTGAATTCATATCTTTGTATTCTGCCCCAAAATGCCTCTA 3751567 Query 97425 TTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTC 97462 || || |||| ||| || || || ||||| |||| Sbjct 3751568 CTGAAAGCCATTAACTGGATGAAAATCCCCTTCGTCTC 3751605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346631451235580