Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq12 104 2e-17 seq44 98.7 9e-16 seq102 95.1 1e-14 seq456 87.8 2e-12 seq453 86.0 5e-12 seq14 86.0 5e-12 seq141 84.2 2e-11 >seq12 Length=16976894 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || || || || || |||||| || ||| Sbjct 6395806 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTCTC 6395747 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | | ||||||||||| || || || ||||||||||||||| Sbjct 6395746 CAGCTGTTTGCCGGCAAAACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 6395687 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||| ||| || | ||||| |||||| || || ||||||| || | || || Sbjct 6395686 GGTTTTAGCTTTGACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTCTT 6395627 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || ||||| || ||||| Sbjct 6395626 GCCCATCAGGGTCTTCACAAAGATTTGCAT 6395597 >seq44 Length=10323257 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| |||||||||||||| | |||||| ||| || Sbjct 7626579 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 7626638 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 7626639 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGG 7626698 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || || || || | ||| | || ||| Sbjct 7626699 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTG 7626758 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 7626759 CCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| |||||||||||||| | |||||| ||| || ||||| || || Sbjct 7626819 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 7626878 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| | |||||| || || || || || ||||| || || || || Sbjct 7626879 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTC 7626938 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||| ||||| | ||| | || ||||||||||| || Sbjct 7626939 ACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 7626998 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 7626999 TTCACGAAGATTTGCAT 7627015 >seq102 Length=6558185 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| ||||||||||| || | |||||| | ||||| Sbjct 2020074 CACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCCTC 2020133 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || |||| |||| | || | || ||||| ||||||||| Sbjct 2020134 CAGCTGTTTGCCCGCAAAAATCAGACACTGCAGGTCATGTGGGATGCCTTCCTTGTCTCG 2020193 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || ||||| || |||||||| | || | || || Sbjct 2020194 GATTTTAGCTTTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGTAATGGTCTT 2020253 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || || || || ||||| Sbjct 2020254 GCCCATCAGTGTCTTCACGAAGATTTGCAT 2020283 >seq456 Length=605306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| ||| || |||||| ||| || Sbjct 383403 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 383344 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| ||||| || |||| || | |||||| || || || |||||||||||||| Sbjct 383343 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 383288 >seq453 Length=1760600 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||||| || ||| |||| || | |||| | |||||| Sbjct 554598 CACCAAGTGCAGGGTGCACTCTTTCTGGATGGTGTAGTCTGAGAGAGTGTGGCCATCCTC 554657 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | | ||||||||||| || || || |||||| |||||||| Sbjct 554658 CAGCTGTTTGCCTGCCAAAGTCAGACGCTGCTGGTCAGGTGGGATGCCCGCCTTGTCTTG 554717 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| ||| ||| |||||| || || ||| || | || | || || Sbjct 554718 GATTTTACCTTTGGCCTTTTCAGTGGTGTCACTGGGCTGGACATCTAGTGTGATGGTCTT 554777 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || | | || ||| |||| Sbjct 554778 GCCCGTCAGGGTCGTCATGAAGATCCGCAT 554807 >seq14 Length=16290508 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 118574 AGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 |||||| || ||| ||||||| || || | || ||||||||||| || || | || Sbjct 4376051 AGTGCGGCCATTCTCCAGCTGTTCGCCTGCAAAAATTAGACGCTGCTGGTCAGGTGTGAT 4376110 Query 118634 GCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTC 118693 ||||||||||||| ||||| ||| || | ||| ||| || || ||||||||| Sbjct 4376111 GCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTTTCAGTGGTATCACTGGGCTCGACCTC 4376170 Query 118694 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || || || |||||| | || ||||| || ||||| Sbjct 4376171 GAGTGTGATGGTCTTTCCCGTCAGAATCTTGACAAACATTTGCAT 4376215 >seq141 Length=4710130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || || ||||| | | | |||| | |||||| Sbjct 2829343 CACCAAGTGCAG-GTGGACTCTTTCTGGATATTGTAGTGGG--AGAGTGTGGCCATCCTC 2829287 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| || || | |||||||||| ||| Sbjct 2829286 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTAGGATGCCCTCCTCATCTTG 2829227 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| | | || || || || ||||||||||| || | || || Sbjct 2829226 GATTTTAGCTTTGCCATTCTCAGTGGCATCACTGGGCTCGACCTCGAGTGTGATGGTCTT 2829167 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| ||| | | ||| || | ||| Sbjct 2829166 GCCGGTCAGGGTTATCATAAAGATTTACAT 2829137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433639559905048