Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq102 100 5e-16 >seq102 Length=6558185 Score = 100 bits (110), Expect = 5e-16 Identities = 104/133 (78%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| |||||||| ||||| || ||||||||| | || || || Sbjct 4591636 GCATTTTTTGGAGCCCAGCTGAATTCTTTCATCCACGTGATTATGTACTCATACTACGGC 4591695 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||||||| ||||| ||||||||||| || || || | Sbjct 4591696 TTAACTGCATTTGGACC-ATGGATTCAGAAA-TATCTTTGGTGGAAACGATACCTGACCA 4591753 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 4591754 TGTTGCAGCTGGT 4591766 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| |||||| | | | || || || || || |||| |||||| |||||||| || Sbjct 4594067 GGTTCAGTTCTTTGTGACCATTGGGCACACAGCACTGTCTCTTTACACTGATTGCCCCTT 4594126 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||||||||||| || ||| | | ||| ||| | || || |||||||| || ||| Sbjct 4594127 CCCAAAATGGATGCACTGGGCTCTAATTGCCTACGCAATCAGCTTCATATTTCTCTTTCT 4594186 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||||| || | |||||||| Sbjct 4594187 TAACTTCTATGTTCGGACATACAA 4594210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922780276683760