Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq85 1700 0.0 seq324 123 2e-23 >seq85 Length=8752973 Score = 1700 bits (1884), Expect = 0.0 Identities = 1365/1647 (83%), Gaps = 40/1647 (2%) Strand=Plus/Minus Query 107135 AAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTA-C 107193 |||| || |||||||| |||||||||||||| |||||| |||||| || || ||| | Sbjct 4985108 AAGGTTCCTAGGCAGGTCTTGACTGAGGATAAATGTCTAGAGAAGAAATACATTTTTTGC 4985049 Query 107194 CATCACTCTGGAGTTGAACTTGATGTTCT-------------GGATTAGTTTGTAATTAA 107240 |||| || ||||||||||||||| ||||| |||||| ||||||| | | Sbjct 4985048 CATCGCTTTGGAGTTGAACTTGACGTTCTTGGGACACATTCAGGATTAATTTGTAACTGA 4984989 Query 107241 AGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTG 107300 ||| ||||| |||||| ||||||| ||||||||| ||| |||||| |||||||| ||| Sbjct 4984988 AGG-ATTTTTTTCTGTTCAAGGATTTCCTCCTCCTCCT---CTGTGCTCAAACTCTACTG 4984933 Query 107301 ATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTG 107360 ||||| ||| ||||||||||| | ||||||||||||| || || | | || | ||| Sbjct 4984932 ATCTCTCATTCCATGAAGATGATTCGGTGGAAGAAGAAACTCTGTCAGCAGTATTACCTG 4984873 Query 107361 TGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTT 107420 ||| ||||||||| |||| ||||||||||| |||| ||||||||||||| ||||| | Sbjct 4984872 TGGACCCTGGGCTTCTATTTGCTGCTGGCCACTGTTGCTCTGAGACTTTCTCTCAGATCG 4984813 Query 107421 AAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGG 107480 || ||||| | |||| | ||||||||||||||||| | | || || ||||||||||| Sbjct 4984812 AAGTGTGACTTTGATTTCCTGGATCTGGAGTCCAGGCGCGTTCAAAGCAAGCACTGTAGG 4984753 Query 107481 GACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATC 107540 ||||| ||||| || ||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 4984752 GACATCTTGTATAAGTCCCTGAAGTTGCCAGCAAAGAGATCCATCAACTGTTCTGGAATC 4984693 Query 107541 ACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAA 107600 | | ||||||||| ||||||||| | |||| ||||| ||||| ||||| || ||||| Sbjct 4984692 ATCCAAGGGGACCAAGAAGCAGTGACCAAGGCTCTCCTGGACAAGCTGGAGGTCAAGAAG 4984633 Query 107601 AAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTC 107660 |||||| |||| ||| | || | ||||||||||||| ||||||||||||| || ||| Sbjct 4984632 AAGCGGGAGCCTTACACAGACAGCGATTACCTCAACATGACCAGAGACTGTGTGCACTTT 4984573 Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720 |||||| |||||||||||||||||| | |||| || ||||||||| |||||||||| ||| Sbjct 4984572 AAGGCCAAAAGGAAGTTCATACAGTACACACTCAGCAAAGAAGAGTTAGACTTCCCTATT 4984513 Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780 || ||||| ||||||||||||||||| ||||||||||||||| |||||||| | ||| || Sbjct 4984512 GCATACTCTATGGTGGTCCATGAGAAAATTGAAAACTTTGAAAGGCTGCTGAGGGCCTTG 4984453 Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA 107840 |||||||||||||||||||| |||||||||||||||| |||||| || || ||||||||| Sbjct 4984452 TATGCCCCTCAGAACATATATTGTGTCCACGTGGATGAGAAGTCTCCGGAAACTTTCAAA 4984393 Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 ||||| |||||||| |||||||| ||||||| |||||||||||||||||||||||||| Sbjct 4984392 GAGGCAGTCAAGGCAATTATTTCATGCTTCCAAAATGTCTTCATGGCCAGTAAGTTGGTT 4984333 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 | |||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct 4984332 CGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGATCTTAACTGTATGGAAGACTTG 4984273 Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 ||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| || || Sbjct 4984272 CTCCAGAGCTCAGTGCCATGGAAATACTTCCTGAATACCTGCGGAACAGACTTTCCTATT 4984213 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 ||||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||| Sbjct 4984212 AAGACCAATGCTGAGATGGTCCAGGCCCTCAAGATGTTGAAGGGGAAGAACAATATGGAG 4984153 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC 108140 || ||| ||||| |||||| |||||| |||||||||||| ||||||| |||||||||| Sbjct 4984152 TCAGAGATACCTACTGAGTTTAAAAAATCTCGCTGGAAATATCGCTATGTGGTGACAGAC 4984093 Query 108141 ACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACA 108200 || | || ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 4984092 ACCATACACATGACCAGCAAGATGAAGGACCCTCCTCCTGATAATTTACCTATGTTCACT 4984033 Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260 |||||||||||| ||||||| |||||||||||||||||||| ||| |||| ||||| ||| Sbjct 4984032 GGGAATGCCTATATTGTGGCTTCTCGAGCCTTTGTCCAACACGTCATAGAGAACCCCAAA 4983973 Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320 |||||| |||| | ||||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 4983972 TCCCAACAACTGATCGAATGGGCAAAAGACACTTATAGCCCCGATGAACACCTCTGGGCC 4983913 Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380 || ||||||||||| || |||||||||||||||||||| ||||||||| |||||| || Sbjct 4983912 ACTCTTCAGCGTGCACCCTGGATGCCTGGCTCTGTTCCCTACCACCCCAAATATCACTTC 4983853 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 ||||||||| | |||| |||||||| |||||||||||| |||| || ||||| ||||| Sbjct 4983852 TCAGACATGGCCTCCATTGCCAGGCTGGTCAAGTGGCAGAACCATGAAGGAGACGTCAGT 4983793 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 |||||||| ||||||||||| |||||||||||||| | | |||| ||||| |||| || Sbjct 4983792 ATGGGGGCACCTTATGCACCTTGCTCTGGAATCCACCAGCGGGCTATCTGTGTTTATGGA 4983733 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || |||||| || | |||||||| ||||||||||| || ||||| |||||||||||||| Sbjct 4983732 GCTGGGGACTTGCATTGGATTCTTCAGAACCATCATCTGTTGGCCAACAAGTTTGACCCT 4983673 Query 108561 AGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 | |||||||||||| || || |||||| ||||||| ||| ||||| |||||||||||||| Sbjct 4983672 AAGGTGGATGATAATGTTCTTCAGTGCCTAGAAGAATACTTACGTTATAAGGCCATCTAT 4983613 Query 108621 GGGACTGAACTTTGAGCTGCA------------------CTGTGGGCCAGGGAC-TGTGC 108661 |||| |||||| | || | || ||| ||| |||| || |||| Sbjct 4983612 GGGATTGAACTCTTAGATACATTATGAGAGAATTGCTACCTGCGGGGCAGGAACACGTGC 4983553 Query 108662 CAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCAT 108721 |||||| |||| ||| |||| || | | ||||||| ||| ||||| | | ||| | Sbjct 4983552 AAACATGTCCAGAACGTGCTGGGACAGCATAGGGTGGGAGACCAGGGC--TCAATTCCGT 4983495 Query 108722 GGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||| || || ||| || |||||||| Sbjct 4983494 GGCACCCTCCGGGGAAAG-GGGCTGCT 4983469 >seq324 Length=2060163 Score = 123 bits (136), Expect = 2e-23 Identities = 568/886 (64%), Gaps = 29/886 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | || Sbjct 172438 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCCATAGTGGTTCATCACAAA 172379 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 172378 ATCGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 172319 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || || | || | ||||| | | |||| || || Sbjct 172318 CATGTGGACAAAAAATCAGAGGATTCCTTTTTGGCTGCGGTGATTGGCATTGCATCTTGT 172259 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || ||||| |||||||| || ||| ||||| ||||| || ||| || Sbjct 172258 TTCAATAACGTCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTATATGCATCATGGAGTCGA 172199 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || || ||||| ||||||||| | ||| | || |||| | ||||| ||||||| Sbjct 172198 GTCCAGGCCGACCTCAACTGTATGCAGGACCT-CTACAGAA-TGAGTGCAGACTGGAAGT 172141 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || || || || || ||||| || || ||| | Sbjct 172140 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 172081 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| || | ||| | |||| | || ||||| | || || | | Sbjct 172080 AACTCAAGTCATTAATGGGAGAAAACAACCTAGAAACTGAGAAAATGCCATCCAAT---A 172024 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG-AGGTGACA--GACACACTGT---ACCCT---A 108153 ||||| | | |||||| | | ||| || || | | | ||| || || | Sbjct 172023 AAAAAGAAAGGTGGAAAAAGCATTATACAGTTGTTAATGGAAAGCTGACAAACACTGGGA 171964 Query 108154 CCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213 | ||| ||| ||||| | ||| | ||| |||| |||| | |||||||| Sbjct 171963 CTGACAAAATGCGT---CCTCCTCTTGAAAC---ACCTCTGTTTTCAGGCAGTGCCTATT 171910 Query 108214 TTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTA-AATCCCAAAGACTG 108272 | |||| | | | | ||| | | || |||| || | ||||| |||| | Sbjct 171909 TCGTGGTCAGTAGGAATTATGTGGAGTACGTGCTAGAGAATGAAAGAATCCAAAAGTTTA 171850 Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332 | || |||| |||||||| || ||||| || || | ||||||||||| ||||| | Sbjct 171849 -TGGAGTGGGCAAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTCAGAG- 171792 Query 108333 GCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 | ||| || | | || ||||| | || | | ||||| |||| || |||||| Sbjct 171791 GATCCCTGAAGTCCCAGGCTCACTGCCCTTAAGCTCTAAGTACGACATGTCCGACATGCA 171732 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 ||| || || ||| | ||||||||||||||| || || ||||| || ||| || || Sbjct 171731 TGCAATTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAGGGCGCCCC 171672 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || |||||||| ||| ||||| | || | || ||| || || || ||| | Sbjct 171671 CTACCCACCCTGCAATGGTGTCCATGTACGTTCCGTGTGTGTTTTTGGAGCAGGTGACTT 171612 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||||| || || || || ||| | || || |||||||||||| Sbjct 171611 GAACTGGATGCTGCACAAGCACCACTTATTTGCCAACAAGTTTGAC 171566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348115598078556