Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05]
36,094 sequences; 2,198,284,804 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq269 111 1e-19
seq54 107 2e-18
>seq269
Length=1942430
Score = 111 bits (122), Expect = 1e-19
Identities = 345/532 (65%), Gaps = 14/532 (3%)
Strand=Plus/Minus
Query 20214 AGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGT 20273
||| ||| |||| || || || ||||| ||||| |||| ||| || || ||| |
Sbjct 1775873 AGAAGGGTATTTAGGCCCAGTTTATGGCTTTCAGTGGAAGTCTTTGGGGGCAGAAGACAA 1775814
Query 20274 TGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTT 20333
|| ||| | || |||| | || ||||||| ||| ||| | || || || | |
Sbjct 1775813 AGATATGTATTCAGATTACTCAGGTCAAGGAGCAGACCAACTGCACAAGGTGACACAC-- 1775756
Query 20334 AATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGT 20393
||| ||||| ||||| | ||||||||||| || | || | ||||| | |||||| |
Sbjct 1775755 AATCAAAACCAACCCTGATGACAGAAGAATCATCCTGTGTTCTTGGAATCCAAAAGATTT 1775696
Query 20394 GCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGA 20453
|||| ||||| | |||| ||||||| || ||||| | || | | || | |||
Sbjct 1775695 TCCTTGCATGGCCCTACCTCTGTGTCATACCCTTTGCCATCTCTATATGGTAAACAGTGA 1775636
Query 20454 ATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATAT 20513
|||| || || |||| | | || || || ||||| || ||||| || ||||| |
Sbjct 1775635 GCTGTCCTGCCAGCTGTACAAGAGGTCAGCAGACATGGGCCTAGGTGTGCCCTTCAACGT 1775576
Query 20514 TGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGA 20573
||| | ||| | ||||| | || ||||||||| | | || | |||||
Sbjct 1775575 TGCCAAATATTCCCTGCT--CCTACGTGATTGCAC--------GGCCTGAAGCCAGGTGA 1775526
Query 20574 CTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATT 20633
||| | ||| | | | | || || |||| || ||||| | |||| | ||| |
Sbjct 1775525 CTTTTTACACTCTTTGACATAGGCACACATTTTTCTGAATCACACTGAACTGCTGAAAAT 1775466
Query 20634 ACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGA 20693
||| | ||| |||||| | ||||||| || | || | ||| ||| |
Sbjct 1775465 GCAGCTTTGTCGAGAACCAAGGCCTTTCCCAAAGCTCCAAATCCTTTGAAAAGTTGA--C 1775408
Query 20694 TATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCAT 20745
|| || || ||||| ||||| || ||| | | ||||| |||||||| |||
Sbjct 1775407 AATCAATGACTTTAAGGCTGAAGACTTTCAGATCGAAGGGTATAATCCTCAT 1775356
>seq54
Length=8220942
Score = 107 bits (118), Expect = 2e-18
Identities = 265/401 (66%), Gaps = 1/401 (0%)
Strand=Plus/Minus
Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTT 20274
|| |||||||| ||| || |||| ||||| | ||| |||||||| || |||||
Sbjct 3751600 GAAGGGGATTTTCATCCAGTTAATGGCTTTCAGTAGAGGCATTTTGGGGCAGAATACAAA 3751541
Query 20275 GACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTA 20334
|| ||||| || |||||| | | |||| |||||| ||| | |||| | | | || |
Sbjct 3751540 GATATGAATTCAGATTATTCTAGTCAAGCAGTAGACCAACTGAAAAAGATAACTGATACA 3751481
Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTG 20394
|| || || ||||| | |||||||||||||| | || || ||||| | ||| || |
Sbjct 3751480 ATCAACACCAACCCTGATGACAGAAGAATTATCCTGTGTGCTTGGAATCCAAAATATCTT 3751421
Query 20395 CCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAA 20454
||| | |||| || || ||| |||| || ||| || || || | ||| | |
Sbjct 3751420 CCTCTCATGGTCTTATCTGCATATCATGCTCTTTGCTCATCCTATGTGGAAAATGGTAAG 3751361
Query 20455 TTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATT 20514
|||| || | | |||| || | | | || ||| || |||| | ||||| |||
Sbjct 3751360 CTGTCTTG-CCAGTGTACCAGAGGTTAGTGGACGTGGACGTGTGTGTGCTCTTCAACATT 3751302
Query 20515 GCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGAC 20574
|| | || | || | || || ||||| |||| ||| || | | | |||||
Sbjct 3751301 GCCAACTACTCCTTGTTCACCTACATGATCACACAAATTATGGACCTGAGGCCAGGTGAT 3751242
Query 20575 TTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCA 20615
|| || |||| | ||||| | || |||||||| |||||
Sbjct 3751241 TTTGTATACACTTTGGGAGATTCCCACATTTACCTGAATCA 3751201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399008400704830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |