Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq269 111 1e-19 seq54 107 2e-18 >seq269 Length=1942430 Score = 111 bits (122), Expect = 1e-19 Identities = 345/532 (65%), Gaps = 14/532 (3%) Strand=Plus/Minus Query 20214 AGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGT 20273 ||| ||| |||| || || || ||||| ||||| |||| ||| || || ||| | Sbjct 1775873 AGAAGGGTATTTAGGCCCAGTTTATGGCTTTCAGTGGAAGTCTTTGGGGGCAGAAGACAA 1775814 Query 20274 TGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTT 20333 || ||| | || |||| | || ||||||| ||| ||| | || || || | | Sbjct 1775813 AGATATGTATTCAGATTACTCAGGTCAAGGAGCAGACCAACTGCACAAGGTGACACAC-- 1775756 Query 20334 AATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGT 20393 ||| ||||| ||||| | ||||||||||| || | || | ||||| | |||||| | Sbjct 1775755 AATCAAAACCAACCCTGATGACAGAAGAATCATCCTGTGTTCTTGGAATCCAAAAGATTT 1775696 Query 20394 GCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGA 20453 |||| ||||| | |||| ||||||| || ||||| | || | | || | ||| Sbjct 1775695 TCCTTGCATGGCCCTACCTCTGTGTCATACCCTTTGCCATCTCTATATGGTAAACAGTGA 1775636 Query 20454 ATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATAT 20513 |||| || || |||| | | || || || ||||| || ||||| || ||||| | Sbjct 1775635 GCTGTCCTGCCAGCTGTACAAGAGGTCAGCAGACATGGGCCTAGGTGTGCCCTTCAACGT 1775576 Query 20514 TGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGA 20573 ||| | ||| | ||||| | || ||||||||| | | || | ||||| Sbjct 1775575 TGCCAAATATTCCCTGCT--CCTACGTGATTGCAC--------GGCCTGAAGCCAGGTGA 1775526 Query 20574 CTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATT 20633 ||| | ||| | | | | || || |||| || ||||| | |||| | ||| | Sbjct 1775525 CTTTTTACACTCTTTGACATAGGCACACATTTTTCTGAATCACACTGAACTGCTGAAAAT 1775466 Query 20634 ACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGA 20693 ||| | ||| |||||| | ||||||| || | || | ||| ||| | Sbjct 1775465 GCAGCTTTGTCGAGAACCAAGGCCTTTCCCAAAGCTCCAAATCCTTTGAAAAGTTGA--C 1775408 Query 20694 TATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCAT 20745 || || || ||||| ||||| || ||| | | ||||| |||||||| ||| Sbjct 1775407 AATCAATGACTTTAAGGCTGAAGACTTTCAGATCGAAGGGTATAATCCTCAT 1775356 >seq54 Length=8220942 Score = 107 bits (118), Expect = 2e-18 Identities = 265/401 (66%), Gaps = 1/401 (0%) Strand=Plus/Minus Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTT 20274 || |||||||| ||| || |||| ||||| | ||| |||||||| || ||||| Sbjct 3751600 GAAGGGGATTTTCATCCAGTTAATGGCTTTCAGTAGAGGCATTTTGGGGCAGAATACAAA 3751541 Query 20275 GACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTA 20334 || ||||| || |||||| | | |||| |||||| ||| | |||| | | | || | Sbjct 3751540 GATATGAATTCAGATTATTCTAGTCAAGCAGTAGACCAACTGAAAAAGATAACTGATACA 3751481 Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTG 20394 || || || ||||| | |||||||||||||| | || || ||||| | ||| || | Sbjct 3751480 ATCAACACCAACCCTGATGACAGAAGAATTATCCTGTGTGCTTGGAATCCAAAATATCTT 3751421 Query 20395 CCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAA 20454 ||| | |||| || || ||| |||| || ||| || || || | ||| | | Sbjct 3751420 CCTCTCATGGTCTTATCTGCATATCATGCTCTTTGCTCATCCTATGTGGAAAATGGTAAG 3751361 Query 20455 TTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATT 20514 |||| || | | |||| || | | | || ||| || |||| | ||||| ||| Sbjct 3751360 CTGTCTTG-CCAGTGTACCAGAGGTTAGTGGACGTGGACGTGTGTGTGCTCTTCAACATT 3751302 Query 20515 GCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGAC 20574 || | || | || | || || ||||| |||| ||| || | | | ||||| Sbjct 3751301 GCCAACTACTCCTTGTTCACCTACATGATCACACAAATTATGGACCTGAGGCCAGGTGAT 3751242 Query 20575 TTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCA 20615 || || |||| | ||||| | || |||||||| ||||| Sbjct 3751241 TTTGTATACACTTTGGGAGATTCCCACATTTACCTGAATCA 3751201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399008400704830