Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq44 111 1e-19 seq456 89.7 4e-13 >seq44 Length=10323257 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | || |||| ||||| || ||| |||||||||||||| || Sbjct 7626789 CCACCCCTCAGACGAAAGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 7626848 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || || | || ||| ||||| || || Sbjct 7626849 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 7626908 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| ||| || || ||| || | | | | |||| | ||||||| Sbjct 7626909 ATACCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACC 7626968 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| ||| || |||||||| ||||| |||||||| ||||||||||| ||| Sbjct 7626969 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 7627019 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | || |||| |||||| || ||| |||||||||||||| || Sbjct 7626560 GCCACCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGA 7626619 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || || | || ||| ||||| || || Sbjct 7626620 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 7626679 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| ||| || || ||| || | | | | |||| | ||||| Sbjct 7626680 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCAC 7626739 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 7626740 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787 >seq456 Length=605306 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | |||| |||||| ||| ||| ||||| |||||||||||| | Sbjct 383421 CCTCCCCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 383362 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || |||||||| || |||| || ||| ||||| || || Sbjct 383361 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 383302 Query 45230 ACACCCTCCTTGTC 45243 | ||||||||||| Sbjct 383301 ATGCCCTCCTTGTC 383288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394901408147974