Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq105 105 6e-18 >seq105 Length=3566936 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || ||||| || | || ||||||| ||| ||||| | Sbjct 2109091 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCT 2109032 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || || |||||||| | Sbjct 2109031 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCAAAAG 2108972 Query 13802 CTATTAGTCGTTCTCC 13817 | | | |||||||| Sbjct 2108971 CGACAACACGTTCTCC 2108956 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| || ||||| || | ||||| || ||||| ||||||||||| ||| Sbjct 2110485 GACATCACTCCCATCTTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTTTTCCCT 2110426 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| || || ||||| || || ||||||||| Sbjct 2110425 TCCAGTGAAATGTTCTCCATGAAGTCAAATGGATTT 2110390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478372872698160