Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq98 170 3e-37 seq61 113 6e-20 >seq98 Length=6041525 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | |||||| |||||||||||| || |||| || ||||| |||||| Sbjct 3625085 GTCTGGAACAAACGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 3625026 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| || || | ||||| || || ||||||||||| || ||||||||||| ||||| Sbjct 3625025 CTGTTATGCTCTCGCAGCCAAATTGTGGCGTACATCATCAGGCCAGGCACCAGACCAAAC 3624966 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | |||| | ||| || || | || ||||||||||| | | Sbjct 3624965 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACGTGAGGGGGATAGATCATCTCC 3624906 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 3624905 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 3624857 Score = 118 bits (130), Expect = 2e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | |||||||| || ||||||| || || || |||| || | Sbjct 3623907 TCACCTTTCACACCCATGGGAGTTGGGCAGTCGTGAGCCACAGGGGGAAGAACTCTGGTA 3623848 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||||||| || || |||||||||||| ||| | |||| || ||||| | Sbjct 3623847 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 3623788 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 ||||||||||||| ||||| |||||| ||||| Sbjct 3623787 GGAGGGCTGTCAACCAAATGGGATCTGGCTGAA 3623755 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 3624509 TCTTACCCCATGACCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 3624450 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| || || |||||||||||||| Sbjct 3624449 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAAATTTGTGCCCTGGGGATC 3624390 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || || | || | || ||| ||||||||||| Sbjct 3624389 AGGGACAAACTTTCTTCTCAGGAGAAATTTTTCCACAA 3624352 Score = 93.3 bits (102), Expect = 6e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | |||| ||||| || | |||||||| || || | Sbjct 3625698 CTTACCCTGCCAGCAATTTGCCTACTGAATGATTCAACAAACTGGGTAAGCCCATGTTCC 3625639 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACT-TTGTTTTATCAATCTC 9440 | | |||||| |||||||| | || | ||||| |||| ||| | | || |||| Sbjct 3625638 AGTAATATGGAGTTGTTGTAGATAAACTGTCGATAGTCGTACTCTTGGTCT-TCGATCTG 3625580 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| | || |||| || | ||||||||| || | |||||||||| | | ||||| Sbjct 3625579 AAAGGTGTCAGGCAAAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACG 3625520 Query 9501 ATTTTGGTACTGGAA 9515 |||||||||||||| Sbjct 3625519 GTTTTGGTACTGGAA 3625505 >seq61 Length=7832668 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || || || || ||||| | |||||||| |||| || |||||| ||| Sbjct 7577740 AAGCCCATCTCGCCACCAAATGTGCTTGACTTCCAGTACTCCGGAGAACAGATGGGATTC 7577681 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| |||||| ||||||||||| |||||||| | || | || || || || |||||| Sbjct 7577680 CCCAAGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTTTCCCCAAAGATG 7577621 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | ||| | || ||||||| || || |||||| Sbjct 7577620 GAGTTTGGATGGCACTTCTCAAGAAGCAGTCCCGGATAGAACTCCAAGGCATCAATGTCT 7577561 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 ||||| | || | || || || || |||||||||||| Sbjct 7577560 CCGTACAACTCCTCCAACTCAGCTGCCATCTCCTTTTCTCCT 7577519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708205131323360