Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq44 89.7 5e-13 seq82 84.2 2e-11 >seq44 Length=10323257 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 7626561 CCACCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 7626620 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| ||||| || Sbjct 7626621 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 7626680 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| || | | |||||| | | || || Sbjct 7626681 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 7626740 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 7626741 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787 >seq82 Length=9063773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || ||||| | | |||||||||||| |||||||||||||| || Sbjct 1210027 ATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATACCTTCCTT 1210086 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 | | || || ||||| || | ||||| | | || || |||| ||||| Sbjct 1210087 ACCCTGGATCTTGGCCTTTACATTTGCTTTTGTGTCCAGGGGTTCTACCTCAAGAGTGAT 1210146 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || |||| ||||||||||| ||| |||| Sbjct 1210147 GGTCTTCCCCATAAGGGTTTTCACAAAAATCCGCAT 1210182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448088942217840