Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq124 132 8e-27 seq973 131 3e-26 >seq124 Length=2816093 Score = 132 bits (146), Expect = 8e-27 Identities = 195/275 (71%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 397357 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 397416 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 397417 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 397476 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 397477 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 397536 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 397537 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 397596 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA-ATCTTCT 16705 ||| | | | || || || || |||| ||| ||| Sbjct 397597 CCGCACGCTCTACGGCTTCGGCGGTTAGATCGTCT 397631 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 455465 CGCCAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 455524 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 455525 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 455584 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 455585 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 455644 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 455645 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 455704 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 455705 CCGCACGCTCTACGGCTTCGG 455725 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 168106 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 168047 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 168046 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 167987 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 167986 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 167927 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 167926 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 167867 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 167866 CCGCACGCTCTACGGCTTCGG 167846 >seq973 Length=72501 Score = 131 bits (144), Expect = 3e-26 Identities = 187/262 (71%), Gaps = 1/262 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || ||||| |||||||| || ||||||||||| || || Sbjct 58303 CGCCAAGCGCCACCGCAAAGTCCTGCGAGACAACATCCAGGGCATCACCAAGCCGGCCAT 58362 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || | |||||| |||| || || | || || |||| Sbjct 58363 CCGGCGCCTGGCACGGCGGGGAGG-GGCAAGCGCATCTCCGGCCTGATTTACGAGGAGAC 58421 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || | ||| || || Sbjct 58422 CCGGGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCGGTAACCTACACGGA 58481 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | || || || | || || || || Sbjct 58482 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 58541 Query 16672 CCGTAAGATTTATGGTTTTGGA 16693 || | | |||||||| ||| Sbjct 58542 ACGCACCCTCTATGGTTTCGGA 58563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79042199003142