Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq26467 140 4e-28 seq311 140 4e-28 seq105 120 4e-22 seq222 84.2 3e-11 >seq26467 Length=4180 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 2947 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 2888 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||| | ||| ||||||||||| ||||| |||||||| || | | |||| Sbjct 2887 GACTCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAA 2828 Query 62457 CTATTTCTAAGACCGTA 62473 |||||||| | ||| || Sbjct 2827 CTATTTCTTATACCATA 2811 >seq311 Length=2724376 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 2492912 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 2492853 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||| | ||| ||||||||||| ||||| |||||||| || | | |||| Sbjct 2492852 GACTCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAA 2492793 Query 62457 CTATTTCTAAGACCGTA 62473 |||||||| | ||| || Sbjct 2492792 CTATTTCTTATACCATA 2492776 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 2478019 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2477960 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| || ||| | | ||||| ||||||| Sbjct 2477959 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCA 2477900 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 2477899 AGGCTCCAGGTAAATAGC 2477882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| |||||||| ||||| | || || || || | || || || |||| Sbjct 2469866 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAACCCTTGCTGCCAGAA 2469807 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 2469806 TGGCATAGTCGGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 2469747 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 2469746 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2469701 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || || ||||| || | || || || || ||||| || || || || || || ||| Sbjct 2482654 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 2482595 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 ||||||||||| ||||| | |||||| | || || || | || ||||| ||||| Sbjct 2482594 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 2482535 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 2482534 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 2482475 Query 62757 TTATTAGA 62764 ||||| || Sbjct 2482474 TTATTTGA 2482467 >seq105 Length=3566936 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || | Sbjct 2109091 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCT 2109032 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| || |||||||| | Sbjct 2109031 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCAAAAG 2108972 Query 33446 C 33446 | Sbjct 2108971 C 2108971 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||| || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 2108096 ATCTTTAATATAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 2108037 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || ||||||||||| | || || || ||||| |||||| | ||| || || Sbjct 2108036 AATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGCTAAACCGCTC 2107977 Query 33684 CGCC 33687 | || Sbjct 2107976 CACC 2107973 >seq222 Length=2514393 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||| ||||||||||||||||| || || | || |||| Sbjct 513675 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 513734 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796 |||| || || |||| | | || || ||||| | | || ||| || |||| Sbjct 513735 AATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 513785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622666141797040