Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq311 100 7e-16 seq105 87.8 5e-12 >seq311 Length=2724376 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||| || || || |||| ||||||||| || || || ||| Sbjct 2479213 GCTCAGCAGCTTTGGTACGCCATTATTGAGTCTCAGACTGAGACAGGTACCCCATACATG 2479272 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || ||||| | Sbjct 2479273 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGC 2479332 Query 364231 AGCAACCTATGTACCGAGAT 364250 |||||||| ||||| || || Sbjct 2479333 AGCAACCTGTGTACAGAAAT 2479352 Score = 98.7 bits (108), Expect = 3e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| ||||| |||||||||||||| | Sbjct 2477873 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGATATCTTTGAGTTTCTTGATTTA 2477932 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| |||||||| ||| |||||| | || || |||| ||| |||||| || Sbjct 2477933 AAGAAGAACACAGGAAAAGAAGAACAGCGTGCCAGGGACCTTTTCTTTGCCCTTTGGATT 2477992 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 2477993 CCGGATCTCTTCATGAAACGAGTGGAG 2478019 >seq105 Length=3566936 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||||| || ||||| || ||||||||||| | ||| | Sbjct 2108959 GAACGTGTTGTCGCTTTTGCTGCCGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCG 2109018 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||| Sbjct 2109019 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATT 2109078 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 2109079 AGCAGAGATGAGG 2109091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302750858425508