Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq302 87.8 2e-12 seq44 86.0 5e-12 >seq302 Length=4907021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || | |||||||||||||||| | ||| ||||| ||| | ||| Sbjct 2002175 GATAAGGAAGGAATTCCTCCTCATCAGCAAAGACTTATCTTTGCTGGCAAGCAACTGGAA 2002116 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | | | || | ||||| | ||||||||| ||||| ||| | ||| | |||||| Sbjct 2002115 GATGGACATATCTTGTCTGATTACAGCATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 2002056 Query 115499 AGA 115501 ||| Sbjct 2002055 AGA 2002053 >seq44 Length=10323257 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| || || || || || || || || ||||| ||| | || |||| | Sbjct 7627018 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCA 7626959 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||||| ||| | || || || || ||||| ||||| ||||| ||| Sbjct 7626958 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCTGAC 7626899 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || || || | ||| ||||| || | ||||||| | || | | ||||| Sbjct 7626898 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 7626839 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 |||||||| |||||||| || | ||| |||| || Sbjct 7626838 AACATTCAGAAAGAGTCGACCCTGCATCTGGTCTT 7626804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425156893035280