Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq30017 127 1e-24 seq30013 127 1e-24 seq34045 118 7e-22 seq33857 114 9e-21 seq1069 105 4e-18 seq44 89.7 3e-13 seq18361 87.8 1e-12 seq302 87.8 1e-12 seq126 84.2 1e-11 >seq30017 Length=5755 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 5154 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 5213 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5214 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 5248 >seq30013 Length=2081 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 1246 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 1305 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1306 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1340 >seq34045 Length=1488 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||| ||||||||||||||||||||| ||||||| ||||| || |||||||| Sbjct 272 AAGCCCGATCCCTTGGCTGTGGTTTCGCTGGATAGTACGTAGGGACAGTGGGAATCTCGT 213 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 212 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 178 >seq33857 Length=1586 Score = 114 bits (126), Expect = 9e-21 Identities = 83/95 (87%), Gaps = 6/95 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| || ||||| ||||| || |||||||| Sbjct 257 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGA-AGTAGGTAGGGACAGTGGGAATCTCGT 199 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||| ||||||| Sbjct 198 TCATCCATTCATGCGCGTCACTAATTAAATGACGA 164 >seq1069 Length=261772 Score = 105 bits (116), Expect = 4e-18 Identities = 81/96 (84%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 ||| ||| ||| |||||||||||||||||| |||||||| ||||| || |||||| Sbjct 130636 TAAACCCATTCGCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCC 130695 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| |||||||| ||||||||||||||||||| Sbjct 130696 TTCATCCATTCATGCGTGTCACTAATTAGATGACGA 130731 >seq44 Length=10323257 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || || || ||| || ||||| ||||||||||| Sbjct 7626561 CCACCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 7626620 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || || | |||| Sbjct 7626621 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 7626680 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || || ||||||||||| | || || | ||| ||| Sbjct 7626681 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 7626740 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| ||| |||||||| |||||||| Sbjct 7626741 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| ||| || |||| ||| || || ||| || ||||| |||||||||| Sbjct 7626787 TACCACCCCTCAGACGAAAGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAG 7626846 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || || ||||| || || | || || || | || Sbjct 7626847 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 7626906 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---T 38265 ||| ||||| || ||| || || ||||||||||| | || | ||||| | Sbjct 7626907 GGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGT---CACTTGGCT 7626963 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || | || || || || || |||| ||| |||||||| || ||||| || Sbjct 7626964 CCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 7627018 >seq18361 Length=1582 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||| |||||| || |||||| |||| | || |||||||| Sbjct 613 AAGCCCGTTCCCTTGGCTACGGTTTCACTGGATAGTGGATAAGAACAGTGGGAATCTCGT 672 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||| || ||| |||||||||||| Sbjct 673 TCATCCATTCATGAGCATCAGTAATTAGATGAC 705 >seq302 Length=4907021 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | | |||||| | |||||||||| |||||||||||| ||||||||| Sbjct 2002040 TACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAG 2002099 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | || | || || | ||| || || ||||| || || | ||| |||| | | Sbjct 2002100 ACAAGATATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAG 2002159 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || ||| || || ||| || | | |||||| ||||| Sbjct 2002160 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTGTATCTTCTATTGTATCTGAGGGTTCAA 2002219 Query 38269 CTTCTAATGTAATAGTTTTACC-CGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | | | ||||| || || || | | | ||||||||| || |||||||| || Sbjct 2002220 CCTTGAGAGTAATGGTCTTCCCTCATAAGGGTTTTCACAAAAATCTGCATCTT 2002272 >seq126 Length=5094692 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009 |||||||||||||||||||| |||||||| |||||||||||| ||||||| || | | Sbjct 2363528 TCTCTTCAAAGTTCTTTTCAGCTTTCCCTTACGGTACTTGTTGACTATCGGCCTTGTGCC 2363469 Query 20010 AATATTTAGCCTTA 20023 |||||||||||| Sbjct 2363468 GGTATTTAGCCTTA 2363455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334799858192114