Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq26467 140 4e-28 seq311 140 4e-28 seq105 111 2e-19 seq222 93.3 5e-14 >seq26467 Length=4180 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 2947 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 2888 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||| | ||| ||||||||||| ||||| |||||||| || | | |||| Sbjct 2887 GACTCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAA 2828 Query 62312 CTATTTCTAAGACCGTA 62328 |||||||| | ||| || Sbjct 2827 CTATTTCTTATACCATA 2811 >seq311 Length=2724376 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 2492912 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 2492853 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||| | ||| ||||||||||| ||||| |||||||| || | | |||| Sbjct 2492852 GACTCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAA 2492793 Query 62312 CTATTTCTAAGACCGTA 62328 |||||||| | ||| || Sbjct 2492792 CTATTTCTTATACCATA 2492776 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 2478019 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2477960 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| || ||| | | ||||| ||||||| Sbjct 2477959 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCA 2477900 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 2477899 AGGCTCCAGGTAAATAGC 2477882 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || | || || || |||| Sbjct 2469866 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAACCCTTGCTGCCAGAA 2469807 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 2469806 TGGCATAGTCGGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 2469747 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 2469746 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2469701 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 || || || ||||| || | || || || || ||||| || || || || || || ||| Sbjct 2482654 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 2482595 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 ||||||||||| ||||| | |||||| | || || || | || ||||| ||||| Sbjct 2482594 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 2482535 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 2482534 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 2482475 Query 62612 TTATTAGA 62619 ||||| || Sbjct 2482474 TTATTTGA 2482467 >seq105 Length=3566936 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 2109091 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCT 2109032 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 2109031 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCAAAAG 2108972 Query 32803 C 32803 | Sbjct 2108971 C 2108971 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| ||| || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 2108096 ATCTTTAATATAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 2108037 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || |||||||| || | || || || ||||| |||||| Sbjct 2108036 AATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTCT 2107991 >seq222 Length=2514393 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 507918 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 507977 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 | ||| ||||| | ||||| ||||| || |||||||||||||| || || || ||||| Sbjct 507978 AACCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCCACAGCAGCGAAGGC 508036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633346121082400