Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq12 105 6e-18 >seq12 Length=16976894 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||| || || |||||||| ||| || || | | Sbjct 6395597 ATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCAGCCCAGT 6395656 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| |||| || ||||| || || || |||||||| Sbjct 6395657 GACACCATCGAAAACGTCA---AAGCTAAAACCCAA-GACAAGGAGGGCATCCCACCTGA 6395712 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | | ||||||||||||||| | || ||| |||||| || || Sbjct 6395713 CCAGCAGCGTCTGAGTTTTGCCGGCAAACAGCTGGAGAATGGCCGCACTCCCTCAGACTA 6395772 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||||| || ||||| ||||| || || || |||||| Sbjct 6395773 TAATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTA 6395809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433137380908610