Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12 102 7e-17 seq44 98.7 8e-16 seq14 98.7 8e-16 seq102 87.8 2e-12 seq456 82.4 6e-11 >seq12 Length=16976894 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| ||||| || || | | || || || |||| | || || | ||| Sbjct 6395595 AGATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCAGCCCA 6395654 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || | ||||| |||| |||||||||||||| || ||||| || | Sbjct 6395655 GTGACACCATCGAAAACGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCACCTGACC 6395714 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| | ||||||||||||||| | ||| || |||||| ||| || || | Sbjct 6395715 AGCAGCGTCTGAGTTTTGCCGGCAAACAGCTGGAGAATGGCCGCACTCCCTCAGACTATA 6395774 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 | || || ||||| |||||| | || || || Sbjct 6395775 ATATCCAGAAAGAGTCCACCCTGCACTTGGT 6395805 >seq44 Length=10323257 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || || | ||||| || || |||| || || ||||| Sbjct 7627021 GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 7626962 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | || ||| | || || | || || || || || ||||| ||||| || || Sbjct 7626961 CCAAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCT 7626902 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| |||||| | || ||| Sbjct 7626901 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 7626842 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| ||||| || ||| | ||| | || || || || | || ||| Sbjct 7626841 TACAACATTCAGAAAGAGTCGACCCTGCATCTGGTCTTTCGTCTGAGGGGTGGT 7626788 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || ||||||||| ||| Sbjct 7626787 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 7626728 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || ||||| || || || || || || Sbjct 7626727 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAG 7626668 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 7626667 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 7626608 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| ||||| || ||| Sbjct 7626607 ATTCAGAAAGAGTCGACC 7626590 >seq14 Length=16290508 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||| |||||||||| ||||| || | | | || || || || |||| || || || || Sbjct 4376222 TGTAGAGATGCAAATGTTTGTCAAGATTCTGACGGGAAAGACCATCACACTCGAGGTCGA 4376163 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| |||||| || | ||||| ||||| |||||||||||||| || |||| Sbjct 4376162 GCCCAGTGATACCACTGAAAACGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCACACC 4376103 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || ||||| || ||||| ||| ||||| | ||| || |||||| | || || Sbjct 4376102 TGACCAGCAGCGTCTAATTTTTGCAGGCGAACAGCTGGAGAATGGCCGCACTTTTTCAGA 4376043 Query 22392 TTACAACAT 22400 || || || Sbjct 4376042 CTATAATAT 4376034 >seq102 Length=6558185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354 ||||| ||||| | ||||||||| || || |||| || | || |||| || |||| Sbjct 2020207 TCAAAGCTAAAATCCGAGACAAGGAAGGCATCCCACATGACCTGCAGTGTCTGATTTTTG 2020148 Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414 | ||||||||| | ||||| | ||||| |||| || ||||||||||| ||||| |||| Sbjct 2020147 CGGGCAAACAGCTGGAGGACAATCGCACTCTCTCAGACTACAACATTCAGAAAGAGTCCA 2020088 Query 22415 C 22415 | Sbjct 2020087 C 2020087 >seq456 Length=605306 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 22312 GACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAG 22371 ||||||||||| || || || || || || | || || |||||||| || ||| | || Sbjct 383288 GACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAA 383347 Query 22372 GATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||| |||||| | ||||| |||||||| || ||||| |||||| | || | || | Sbjct 383348 GATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTT 383407 Query 22432 CGATTGCGCGGAGGT 22446 || ||| | |||||| Sbjct 383408 CGCTTGAGGGGAGGT 383422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419543363489110