Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq44 165 2e-35 seq12 120 6e-22 seq456 107 4e-18 seq404 98.7 2e-15 seq102 93.3 8e-14 seq14 91.5 3e-13 seq27 87.8 3e-12 seq852 86.0 1e-11 seq11601 84.2 4e-11 seq477 84.2 4e-11 seq82 84.2 4e-11 >seq44 Length=10323257 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| || ||||| ||||| || || || | |||||||| Sbjct 7626579 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 7626638 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || ||||| || || ||||||||||| || || Sbjct 7626639 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGG 7626698 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || ||| |||||||| | ||| ||||||| ||||||||| || Sbjct 7626699 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTG 7626758 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 7626759 CCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787 >seq12 Length=16976894 Score = 120 bits (132), Expect = 6e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| ||||| ||||| || ||| | || | |||| || Sbjct 6395805 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTCTCC 6395746 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || ||||| || | || | || ||||| ||||| ||||| ||||||||||| Sbjct 6395745 AGCTGTTTGCCGGCAAAACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 6395686 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 | || || |||||| ||||||||||| | | || || |||||||| || Sbjct 6395685 GTTTTAGCTTTGACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTCTTG 6395626 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | |||||||| || || || ||||| Sbjct 6395625 CCCATCAGGGTCTTCACAAAGATTTGCAT 6395597 >seq456 Length=605306 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||| | |||| ||| || ||||||||||| |||||||| || ||||| Sbjct 383421 CCTCCCCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 383362 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| ||||| || || || || || ||||| || || Sbjct 383361 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 383302 Query 68355 ATGCCTTCCTTGTC 68368 ||||| |||||||| Sbjct 383301 ATGCCCTCCTTGTC 383288 >seq404 Length=3166660 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| | ||| ||||| | ||||| || | ||||| | Sbjct 1028034 ACCAGGTGCAGGGTGGACTCTTTCTCGATATTATAGACTGAGAGAGTTCGGCCATCCGCC 1028093 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| | || | || || || | || || ||||| ||||| ||||||||||| Sbjct 1028094 ACCTGTTCGCCCACAAAAATCAGACGATGCCAGTAAGGTGGGATGCCCTCCTTGTCTTGG 1028153 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTT 68431 || || || | |||| || ||||||| |||| || || || | |||||||| || Sbjct 1028154 ATTTTAGCTTCGACGTTTTCAGTGGTGTC-ACTGAGCTCGACCTCAAGTGTGATGGTCTT 1028212 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGC 68459 ||||| |||||||| || || |||||| Sbjct 1028213 GCCCGTCAGGGTCTTCACAAAGATCTGC 1028240 >seq102 Length=6558185 Score = 93.3 bits (102), Expect = 8e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| || ||||| || || ||||| || | || || Sbjct 2020075 ACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCCTCC 2020134 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || | || |||| |||| ||||||||||||||| | Sbjct 2020135 AGCTGTTTGCCCGCAAAAATCAGACACTGCAGGTCATGTGGGATGCCTTCCTTGTCTCGG 2020194 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 || || || |||||| || |||||| | || | || || | || ||||| || Sbjct 2020195 ATTTTAGCTTTGACGTTATCAGTGGTGT-TACTGGGCTCGACCTTGTGTGTAATGGTCTT 2020253 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | || ||||| ||||| || ||||| Sbjct 2020254 GCCCATCAGTGTCTTCACGAAGATTTGCAT 2020283 >seq14 Length=16290508 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||||| || | || |||||| ||| ||||| || || | || | |||| || Sbjct 4376006 TACCAAGTACAGGGAGGGCTCTTTCCAGATATTATAGTCTGAAAAAGTGCGGCCATTCTC 4376065 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 | ||| | || || || || || | || ||||| |||| ||||| ||||||||||| Sbjct 4376066 CAGCTGTTCGCCTGCAAAAATTAGACGCTGCTGGTCAGGTGTGATGCCCTCCTTGTCTTG 4376125 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || || || |||||| || |||| || | || || || | |||||||| || Sbjct 4376126 GATTTTAGCTTTGACGTTTTCAGTGGTATCACTGGGCTCGACCTCGAGTGTGATGGTCTT 4376185 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || ||||||| || || ||||| Sbjct 4376186 TCCCGTCAGAATCTTGACAAACATTTGCAT 4376215 >seq27 Length=11214825 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| || ||||| | |||| || || | ||||||||| | |||||||||||| || | Sbjct 501007 CTTTCTGAATGTTGT---CGGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGA 501063 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | || || || ||||| || || ||||| || |||||||| ||| |||||||| || Sbjct 501064 TCAGCCTCTGCTGGTCCGGGGGGATGCCCTCTTTGTCTTGGGCCTTGGCCTTGACATTCT 501123 Query 68392 CGATGGT 68398 |||||| Sbjct 501124 TGATGGT 501130 >seq852 Length=144798 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| | | | || || || ||||| || | | ||||| Sbjct 60844 ACCAAGTGCAGAGTGGACTCTTTCTTGTTATTTTAGTCTGAGAGAGTGCAGCTGTCTTCC 60785 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || | || ||||| |||| ||||||||||||||||| Sbjct 60784 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGCGATGCCTTCCTTGTCTTGG 60725 Query 68373 ATCTTTGCCTTG 68384 || || || ||| Sbjct 60724 ATTTTAGCTTTG 60713 >seq11601 Length=6222 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/132 (75%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| ||||| || || ||||||||||| ||||| || Sbjct 4330 ACCAAGTGCAG-GTGGACTCTTTCTGGATATTGTAGTCGGAGAGTGT--GGCCATCCTCC 4386 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || | || ||||| ||| | ||||| |||| ||||| Sbjct 4387 AGCTGTTTGCCCGCAAAAATAAGACACTGCTGGTCAGGTAGGATGCCCTCCTCATCTTGG 4446 Query 68373 ATCTTTGCCTTG 68384 || || || ||| Sbjct 4447 ATTTTAGCTTTG 4458 >seq477 Length=2441119 Score = 84.2 bits (92), Expect = 4e-11 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || ||||| || |||||||||||||||| ||||| || ||||| || ||||| ||| Sbjct 8445 ACTAAGTGCAGGGTGGACTCTTTTTGGACATTATAGTCTGAGAGAGTATGGCCATCCTCT 8386 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || | || | || | ||| ||| ||| || || ||||||||||| Sbjct 8385 AGCTCTTTGCCTACAAAATTCAGACATTG-CAGTCAGGTTTGATACCCTCCTTGTCTTGG 8327 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTT 68431 || || || ||||| || ||||||| |||| || || | | ||||||| | Sbjct 8326 ATTTTAGCTTTGACATTTTCAGTGGTGTC-ACTGAGGTCAACCTTTAGTGTGATGGCCCT 8268 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | |||||||| | || |||||||| Sbjct 8267 TCCCATCAGGGTCTTCAGAAAGATCTGCAT 8238 >seq82 Length=9063773 Score = 84.2 bits (92), Expect = 4e-11 Identities = 154/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 68238 CCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT 68297 || ||||| | ||| || ||| | || || ||||||||||| ||| || | || | Sbjct 1209963 CCTCGAAGTCTCAACAC-AAGAGAAGAGTAGACTCTTTTTGAATG---TAGCCAGACAAA 1210018 Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 || ||||||| | ||||| || || || | |||||||| || || || ||||| Sbjct 1210019 GTATGTTCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATA 1210078 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||| | || ||||| ||||| || | | ||||| | |||||| || Sbjct 1210079 CCTTCCTTACCCTGGATCTTGGCCTTTACATTTGCTTTTGTGTCCAGGGGTTCTACCTCA 1210138 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || ||| | ||||| || || || ||| |||| Sbjct 1210139 AGAGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCCGCAT 1210182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921206587013680