Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq269 87.8 2e-12 >seq269 Length=1942430 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 20270 AGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATAC 20329 |||||||| |||||| ||| || || || || | ||||||||| | ||||||| ||| Sbjct 1775561 AGGGAATATTTGGCAACGTTGAAGGGCACACCTAGGCCCATGTCTGCTGACCTCTTGTAC 1775620 Query 20330 AGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGA 20389 ||||| ||||| ||||||| || | | ||| | || || | ||||| | || Sbjct 1775621 AGCTGGCAGGACAGCTCACTGTTTACCATATAGAGATGGCAAAGGGTATGACACAGAGGT 1775680 Query 20390 AGCGCCAT-CAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTG 20448 || ||||| ||| || || || || ||||| | ||||| ||||||||||| || | Sbjct 1775681 AGGGCCATGCAAGGAAAA-TCTTTTGGATTCCAAGAACACAGGATGATTCTTCTGTCATC 1775739 Query 20449 CGGATTATTTTTTATTAAAT-CCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTAT 20507 || || |||| ||| | ||| ||| || |||||| || || |||| | Sbjct 1775740 AGGGTTGGTTTTGATTGTGTGTCACCTTGT---GCAGTTGGTCTGCTCCTTGACCTGAGT 1775796 Query 20508 AGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAG 20567 | || | || | || || | ||||| || | ||||||| || || ||||| | Sbjct 1775797 AATCTGAATACATATCTTTGTCTTCTGCCCCCAAAGACTTCCACTGAAAGCCATAAACTG 1775856 Query 20568 GTCCCAAATCCCCCTCCCTTCTG 20590 | || |||| ||| || ||||| Sbjct 1775857 GGCCTAAATACCCTTCTGTTCTG 1775879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441173663626960