Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq640 102 9e-17 >seq640 Length=472180 Score = 102 bits (112), Expect = 9e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| |||| || ||||||||||| ||||||||||| || | Sbjct 467304 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAATTTTACCTGGAGGAGGTGA 467245 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| |||||||| | ||||| ||| || ||| | || || || || | || |||| Sbjct 467244 TGCCCCAGGCTGAGAGCCAGGGCCCAGACATCAAGAAACACGTGAACTCCCTTGGGGAAA 467185 Query 9981 ATCTAAAGACCCTACGGCT 9999 | || ||||| || |||| Sbjct 467184 AGCTGAAGACACTCAGGCT 467166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| | ||||||||||||||||| |||||||| || || ||||||| Sbjct 465100 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 465041 Query 10140 TAGAAGCATACATGACAATTAA 10161 ||||||| ||||||||||| || Sbjct 465040 TAGAAGCCTACATGACAATGAA 465019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552467427997760