Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq44 122 2e-22 seq14 111 4e-19 seq12 105 2e-17 seq363 102 2e-16 seq11 96.9 8e-15 seq141 93.3 1e-13 seq391 87.8 4e-12 seq7 86.0 1e-11 >seq44 Length=10323257 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | || ||||| || ||||| | || || ||||| ||| Sbjct 7626597 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 7626656 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || ||||| ||||||||||| || || ||||| Sbjct 7626657 ATGAGCCTCTGCTGG---TCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 7626713 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | ||| ||||| || ||||| ||||| |||||||| ||||| Sbjct 7626714 TTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 7626773 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 7626774 ACGAAGATCTGCAT 7626787 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | || ||||| || ||||| | || || ||||| ||| Sbjct 7626825 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 7626884 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || ||||| || Sbjct 7626885 ATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTC 7626944 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 7626945 TCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 7627004 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 7627005 AAGATTTGCATTTTG 7627019 >seq14 Length=16290508 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||| | | ||||| || | || | |||| ||||| || Sbjct 4376025 TCTTTCCAGATATTATAGTCTGAAAAAGTGCGGCCATTCTCCAGCTGTTCGCCTGCAAAA 4376084 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | || ||| || || || || |||||||| ||||| |||||| Sbjct 4376085 ATTAGACGCTGCTGGTCAGGTGTGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTT 4376144 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | | ||| || | || || ||||| ||||| ||||| || |||||| ||||||| Sbjct 4376145 TCAGTGGTATCACTGGGCTCGACCTCGAGTGTGATGGTCTTTCCCGTCAGAATCTTGACA 4376204 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 4376205 AACATTTGCAT 4376215 >seq12 Length=16976894 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||||| | | | ||||| || | || | ||||| || || || Sbjct 6395787 TCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTCTCCAGCTGTTTGCCGGCAAAA 6395728 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||||| || | |||||| || || || || ||| |||| ||||| |||||| Sbjct 6395727 CTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGGTTTTAGCTTTGACGTTT 6395668 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | | || ||| | ||||| ||||| || |||| ||||| || Sbjct 6395667 TCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTCTTGCCCATCAGGGTCTTCACA 6395608 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 6395607 AAGATTTGCAT 6395597 >seq363 Length=1945052 Score = 102 bits (112), Expect = 2e-16 Identities = 138/192 (72%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||| |||||||||| | ||| | || || | || | ||||| |||| || Sbjct 1667534 TCTTTTTGGGTATTATAGTCTGAGAGAGCACGGCCAGCCTCCAGCTGTTTGTCTGCAAAA 1667475 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || |||||| || || || | ||||||||| ||||| || || Sbjct 1667474 ATCAGACGCTGCTG-----GTGGGATGCCCTCCTTGTTCTGGATTTTAGCTTTGACATTC 1667420 Query 288403 TCTATAGAATCGCTCGATTCTACTTCG----AGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||| | || || | || || ||| || ||||| ||||| || ||||||||||| Sbjct 1667419 TCTACGGTGTCCCTGGGCTCGACCTCGAGTTAGTGTGATGGTCTTTCCCGTCAGAGTCTT 1667360 Query 288459 GACGAATATCTG 288470 || || ||||| Sbjct 1667359 CACCAAGATCTG 1667348 >seq11 Length=19879869 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||||| | ||| ||| | || || || | |||||| || | || Sbjct 9816099 TCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCCAGTTGTTTGCCCACAAAA 9816158 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||| || || | | |||| || ||||| || |||||||| ||||| || || Sbjct 9816159 ATCAGATCCTACTGGTTAGGTAGGATGCCCTCTTTGTCTTGGATTTTAGCTTTGACATTC 9816218 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||| | | || || | || | | ||| | ||| ||||| || |||||||| || || Sbjct 9816219 TCTGTGGTGTCACTGGGCTCGATCTTGAGTGAGATGGTCTTGCCAGTCAGAGTATTCACA 9816278 Query 288463 AATATCTGCAT 288473 | |||||||| Sbjct 9816279 GAAATCTGCAT 9816289 >seq141 Length=4710130 Score = 93.3 bits (102), Expect = 1e-13 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| |||| || ||| ||| || || || | ||||| || || || Sbjct 2829325 TCTTTCTGGATATTGTAGTGGGAGAGTGTGG--CCATCCTCCAGCTGTTTGCCCGCAAAA 2829268 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | | |||| || || | ||| |||||||| ||||| | || Sbjct 2829267 ATCAGACGCTGCTGGTCAGGTAGGATGCCCTCCTCATCTTGGATTTTAGCTTTGCCATTC 2829208 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || | | ||| || | || || ||||| ||||| ||||| |||||||| || Sbjct 2829207 TCAGTGGCATCACTGGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTCAGGGT 2829155 >seq391 Length=1629883 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || | ||||| | | || ||||||||||| | ||| || | || ||| Sbjct 1120655 TCCTTTTGAATGCTGTAGTCAGACAAGGTACGTCCGTCTTCCAGTTGCTTGTCAGCAAAG 1120596 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | || ||| | || ||||||| ||||||||||| || || || || ||| Sbjct 1120595 GTCAGTCTTTGCTGATCAGGAGGAGTTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 1120536 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| | | | | ||| || || || |||| | ||||||||| || || || || Sbjct 1120535 TCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAAAGACTTCCCGGTAAGGGTTTTCACA 1120476 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1120475 AAAATCTGCAT 1120465 >seq7 Length=17524079 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | | | ||||| ||| || ||||| || || ||||| | Sbjct 1247701 CCACCATGAAGTCTCAACGCAACATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1247760 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC-GCTGTTGAGAATCTGG 288365 | || || || ||||| | ||| || || || ||| ||| | |||| | |||| || Sbjct 1247761 AAGGTACGCCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAATCTGCTGATCAGAA---GG 1247817 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| ||||||||||| || || || || |||||| | | | | | ||| || Sbjct 1247818 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTAACTGAAGCTTCAAC 1247877 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||| |||||||| | || || || ||||| || ||||| Sbjct 1247878 CACGAGAATGATAGTCTTCCCTATAAGGGTTTTCACGAAAATTTGCAT 1247925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179108863661732