Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq44 143 3e-29 seq149 96.9 3e-15 seq302 93.3 4e-14 seq7 82.4 8e-11 >seq44 Length=10323257 Score = 143 bits (158), Expect = 3e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | ||||| ||||| |||||||||||||| | | ||||| | ||||| Sbjct 7626807 ACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 7626866 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||||||||| ||| | ||||||| ||||||||| || || || ||||| || || || Sbjct 7626867 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTATCCTGG 7626926 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||| ||| ||| | || |||| | ||||| || | || | ||||||| Sbjct 7626927 ATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTG 7626986 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||| || || ||||| ||||||||||| Sbjct 7626987 CCGGTCAGGGTCTTCACGAAGATTTGCATTTT 7627018 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| |||||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 7626591 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 7626650 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || ||||| || || || || || ||| Sbjct 7626651 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 7626710 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || |||||||| | || | |||||||||||||| || Sbjct 7626711 ACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 7626770 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 7626771 TTCACGAAGATCTGCAT 7626787 >seq149 Length=3750918 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 64239 GATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCT 64298 |||||| ||| || | |||||||||||||| || | | || || | ||||| || | Sbjct 2393904 GATGAAGCGTGGACTACTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTT 2393963 Query 64299 GCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTT 64358 ||||||| ||| | | || | ||||| || ||||||||| |||| || | || || | Sbjct 2393964 GCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTGGATCT 2394023 Query 64359 TTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGG 64418 | ||||||| || | |||||| || || || || | ||| | | |||| || | Sbjct 2394024 TGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGATCTTCCCTG 2394083 Query 64419 TCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | ||||| |||||||| ||||| || Sbjct 2394084 TAAGGGTTTTCACGAAAATCTGCATCTT 2394111 >seq302 Length=4907021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || ||||||||| ||||||| | | | | | | Sbjct 2002053 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGATATGTCC 2002112 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | ||||| | |||||||||||||| || Sbjct 2002113 ATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTCCTT 2002172 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || |||| | | || | |||||| || || || | | ||| | Sbjct 2002173 ATCCTGGATCTTGGCCTTTGTATCTTCTATTGTATCTGAGGGTTCAACCTTGAGAGTAAT 2002232 Query 64408 GGTCTTGCCGGTCAAA---GTTTTTACGAAAATTTGCATTTTAATAATG 64453 |||||| || ||| | ||||| || ||||| ||||| ||| |||| Sbjct 2002233 GGTCTTCCC--TCATAAGGGTTTTCACAAAAATCTGCATCTTAGCAATG 2002279 >seq7 Length=17524079 Score = 82.4 bits (90), Expect = 8e-11 Identities = 143/207 (69%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| || || || |||||||||||||| || | | ||| ||| | ||||| || || Sbjct 1247724 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACGCCCATCTTCCAGTTG 1247783 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 |||||| || ||| | |||||| || | |||||||||||| || || || || || Sbjct 1247784 CTTGCCAGC--AAAGGTCAATCTGCTGATCAGAAGGAATTCCTTCCTTATCCTGGATCTT 1247841 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||||| || |||| | || || || | | | | | ||||| || | Sbjct 1247842 GGCCTTTACATTTTCTGTTGTAACTGAAGCTTCAACCACGAGAATGATAGTCTTCCCTAT 1247901 Query 64420 CAAAGTTTTTACGAAAATTTGCATTTT 64446 | ||||| |||||||||||||| || Sbjct 1247902 AAGGGTTTTCACGAAAATTTGCATCTT 1247928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499419372757360