Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq98 179 5e-40 >seq98 Length=6041525 Score = 179 bits (198), Expect = 5e-40 Identities = 174/224 (78%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||| |||||||| ||||||| || || || ||||| || ||||| || || Sbjct 3625085 GTCTGGAACAAACGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 3625026 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||| || |||| |||||| || |||||||||||||| | || ||||| | ||||||| Sbjct 3625025 CTGTTATGCTCTCGCAGCCAAATTGTGGCGTACATCATCAGGCCAGGCACCAGACCAAAC 3624966 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | |||||| ||||| ||||| | || || || | || | ||| | ||| | | Sbjct 3624965 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACGTGAGGGGGATAGATCATCTCC 3624906 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| |||||||| || || ||||| Sbjct 3624905 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 3624862 Score = 161 bits (178), Expect = 1e-34 Identities = 205/282 (73%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| || |||||||| || ||||| |||||||| | ||||| || | ||| | Sbjct 3626657 GGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTGAGGCGGTGTTGATGATTTTG 3626598 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 |||||||| || || || || ||||| || |||||||| || || || || | || Sbjct 3626597 AAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTGAGGAGAACATATAGCATTA 3626538 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || ||||||||||| || || || || || || | ||| ||||||| |||||| Sbjct 3626537 CCCATAAGTCCTTTCAAGGAGAAAGGTGCTCCAAGTTCCACCATGGTCTCACCAAAGATG 3626478 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 ||| | ||||| || ||||| || | | | ||| || || || | || || | ||| Sbjct 3626477 GCATCTGGACGAGGCTTTTCAACCAGAAGGGCAGGATACAGCTCCATGGCATCAATGTCA 3626418 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||||| || ||||| ||||| ||||| || |||||||| ||| Sbjct 3626417 CCATAAAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTCCT 3626376 Score = 120 bits (132), Expect = 4e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 10115 GTTCGCTCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGT 10174 |||| ||||||||||||| |||| |||| | |||||||| ||||||||| ||| || Sbjct 3624515 GTTCTCTCTTACCCCATGACCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGT 3624456 Query 10175 CCTAAAAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTG 10234 | | |||||||| || || ||||| || | || || || ||||||| || |||||||| Sbjct 3624455 CTTGAAAAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAAATTTGTGCCCTG 3624396 Query 10235 GGGATCGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATC 10280 |||||| |||| ||| | || | | | || ||| ||||||||| Sbjct 3624395 GGGATCAGGGACAAACTTTCTTCTCAGGAGAAATTTTTCCACAATC 3624350 Score = 113 bits (124), Expect = 7e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| |||||||| ||| || || || ||| ||| ||| Sbjct 3623907 TCACCTTTCACACCCATGGGAGTTGGGCAGTCGTGAGCCACAGGGGGAAGAACTCTGGTA 3623848 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||||| ||||||||||| ||||||||||| | | ||||| Sbjct 3623847 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 3623788 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || ||||||| || | ||| |||||| Sbjct 3623787 GGAGGGCTGTCAACCAAATGGGATCTGGCT 3623758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723401472019600