Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq44 125 2e-23 seq302 105 2e-17 seq149 100 7e-16 seq82 100 7e-16 seq7 100 7e-16 seq456 96.9 8e-15 seq434 96.9 8e-15 seq391 96.9 8e-15 seq91 84.2 5e-11 >seq44 Length=10323257 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || |||||||| || || | |||||| |||| | ||| | |||||| Sbjct 7626576 AGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 7626635 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| || || ||||| ||| Sbjct 7626636 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCC 7626695 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | ||| || |||| ||||| ||| Sbjct 7626696 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTC 7626755 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 7626756 TTGCCGGTCAGGGTCTTCACGAAGATCTG 7626784 Score = 122 bits (134), Expect = 2e-22 Identities = 157/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| || || || |||||||| || || | |||||| |||| | ||| | |||||||| Sbjct 7626806 GACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 7626865 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 ||||||||| || || |||||||| | ||||||||| || || ||||| ||||| Sbjct 7626866 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTATCCTG 7626925 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 ||||| |||||| || | |||||| ||| || || |||| ||||| ||||| Sbjct 7626926 GATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTT 7626985 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || ||||| || ||||| |||||| Sbjct 7626986 GCCGGTCAGGGTCTTCACGAAGATTTG---CATTTT 7627018 >seq302 Length=4907021 Score = 105 bits (116), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| ||||| || ||||| ||||||||||| | | |||| |||| ||| | Sbjct 2002050 AAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGATATG 2002109 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| ||||| || || ||||| || | ||||| | ||| ||||||||| Sbjct 2002110 TCCATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTC 2002169 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| ||||| ||| ||| | || |||| | ||| || | | || Sbjct 2002170 CTTATCCTGGATCTTGGCCTTTGTATCTTCTATTGTATCTGAGGGTTCAACCTTGAGAGT 2002229 Query 199591 GATCGTCTTACC-CGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638 || ||||| || | | || |||||||||||||| || ||| ||||| Sbjct 2002230 AATGGTCTTCCCTCATAAGGGTTTTCACAAAAATCTG---CATCTTAGC 2002275 >seq149 Length=3750918 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || |||| |||||| | ||||||||||| || ||| | |||||||||||| ||| Sbjct 2393906 TGAAGCGTGGACTACTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTTGC 2393965 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||| | || | ||||| || ||| |||| |||| | ||| ||||| Sbjct 2393966 TTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTGGATCTTG 2394025 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | || || | | ||| || || | ||||| |||| || || Sbjct 2394026 GCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGATCTTCCCTGTA 2394085 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| || Sbjct 2394086 AGGGTTTTCACGAAAATCTG 2394105 >seq82 Length=9063773 Score = 100 bits (110), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| ||||| | ||||| ||||| ||||| | ||||| ||| |||||| Sbjct 1209965 TCGAAGTCTCAACACAAGA-GAAGAGTAGACTCTTTTTGAA---TGTAGCCAGACAAAGT 1210020 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| ||||| || || ||| | || | ||||| || ||| ||| || Sbjct 1210021 ATGTTCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATACC 1210080 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||| ||||| ||| || | | ||||| | |||||| || | Sbjct 1210081 TTCCTTACCCTGGATCTTGGCCTTTACATTTGCTTTTGTGTCCAGGGGTTCTACCTCAAG 1210140 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||| ||||| ||| | || |||||||||||||| Sbjct 1210141 AGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAAT 1210176 >seq7 Length=17524079 Score = 100 bits (110), Expect = 7e-16 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||| || ||||| ||||||||||| | ||||||||||| ||| || | Sbjct 1247708 GAAGTCTCAACGCAACATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTAC 1247767 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||||||||| ||||| || || ||| | | |||||| || | | |||||||| Sbjct 1247768 GCCCATCTTCCAGTTGCTTGCCAGCAAAG--GTCAATCTGCTGATCAGAAGGAATTCCTT 1247825 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| ||| || ||| || ||| | ||| || | | Sbjct 1247826 CCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTAACTGAAGCTTCAACCACGAGAA 1247885 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| || | || |||||||| |||||||| Sbjct 1247886 TGATAGTCTTCCCTATAAGGGTTTTCACGAAAATTTG 1247922 >seq456 Length=605306 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| ||||||||| | || || | |||||| Sbjct 383406 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 383347 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||||||||| ||||| || | ||||||||| || Sbjct 383346 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGG 383306 >seq434 Length=2484400 Score = 96.9 bits (106), Expect = 8e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||||| | ||||| ||||||||||| | |||||||||| || ||| Sbjct 1040655 GAAGTCTCAACACAAGATTAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGAGTAT 1040714 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || | |||| || | ||||| || ||| |||||||| Sbjct 1040715 ATCCATCTTCCAGTTGCTTGCCAGGAAAGAGCAGCCTTTGCTGATCAGGAGGAATTCCTT 1040774 Query 199530 CTCGCTCCTGAATCTT 199545 | ||||| ||||| Sbjct 1040775 CCTTATCCTGCATCTT 1040790 >seq391 Length=1629883 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| |||||||| | ||||||||||| | | ||||||||| ||| || | Sbjct 1120678 AAGTCTCAACACAAGGTG-----TGGACTCCTTTTGAATGCTGTAGTCAGACAAGGTACG 1120624 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||| |||||||| ||||| | || ||| | || | ||||| || ||| | ||||||| Sbjct 1120623 TCCGTCTTCCAGTTGCTTGTCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAGTTCCTTC 1120564 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| ||||| ||| || ||| | || | | | ||| || || | || Sbjct 1120563 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGT 1120504 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || | ||| || || || |||||||||||||| || Sbjct 1120503 GAAAGACTTCCCGGTAAGGGTTTTCACAAAAATCTG 1120468 >seq91 Length=9027055 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||||| |||||| | |||||||||||| ||||| || || |||| Sbjct 4854658 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCCGCAAAGA 4854717 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | ||||| || ||| ||||||| Sbjct 4854718 TCAGTCTTTGCTGATCAGGAGGAATTCCT 4854746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178376402548298