Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq102 120 3e-22 seq12 120 3e-22 seq453 102 8e-17 seq141 96.9 3e-15 seq456 93.3 4e-14 seq11601 87.8 2e-12 >seq102 Length=6558185 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || | |||||| ||||| || | | |||||| ||| Sbjct 2020283 ATGCAAATCTTCGTGAAGACACTGATGGGCAAGACCATTACACACAAGGTCGAGCCCAGT 2020224 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || |||| | |||| ||||||| ||||| || || || || |||| Sbjct 2020223 AACACCACTGATAACG-TCAAAGCTAAAATCCGAGACAAGGAAGGCATCCCACATGACCT 2020165 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || |||| ||||||||||||||||| ||| | ||||| ||| |||||||| Sbjct 2020164 GCAGTGTCTGATTTTTGCGGGCAAACAGCTGGAGGACAATCGCACTCTCTCAGACTACAA 2020105 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 ||| || || || | || ||||| |||||||| ||| || Sbjct 2020104 CATTCAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTG 2020065 >seq12 Length=16976894 Score = 120 bits (132), Expect = 3e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || | |||||| |||||||| ||| ||| || ||| Sbjct 6395597 ATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCAGCCCAGT 6395656 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | |||| |||| || ||||| ||||| || || | ||||| Sbjct 6395657 GACACCATCGAAAACG-TCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCACCTGACCA 6395715 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCA--CCCTCAACGACTAC 38420 ||||| || | || || |||||||||||||| | | |||| |||||| ||||| Sbjct 6395716 GCAGCGTCTGAGTTTTGCCGGCAAACAGCTGGAGAATGGCCGCACTCCCTCA--GACTAT 6395773 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||| || || | || ||||| |||||||| ||| || | || ||| Sbjct 6395774 AATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTACGTCTGTGGGGTGGC 6395824 >seq453 Length=1760600 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||| || ||| | | || || |||||||| |||||||| | || ||| || ||| Sbjct 554807 ATGCGGATCTTCATGACGACCCTGACGGGCAAGACCATCACACTAGATGTCCAGCCCAGT 554748 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| || |||| ||||||| ||||| | ||| || || | ||||| Sbjct 554747 GACACCACTGAAAAGGCC-AAAGGTAAAATCCAAGACAAGGCGGGCATCCCACCTGACCA 554689 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || | || || |||||||||||||| || | | ||| ||| ||||||| Sbjct 554688 GCAGCGTCTGACTTTGGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGACTACAC 554629 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| || || || ||||| |||||||| Sbjct 554628 CATCCAGAAAGAGTGCACCCTGCACTTGGTGCT 554596 >seq141 Length=4710130 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/231 (71%), Gaps = 10/231 (4%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||| |||| || | | ||| || || ||||| |||||||| |||| |||||| ||| Sbjct 2829137 ATGTAAATCTTTATGATAACCCTGACCGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 2829196 Query 38304 GA---CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 || || | | || || |||| ||||||| || | ||||| || | | ||| Sbjct 2829197 GATGCCACTGAG-AATGGC--AAAGCTAAAATCCAAGATGAGGAGGGCATCCTACCTGAC 2829253 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || |||| ||||||||||||||||| || | || ||| ||| | ||||| Sbjct 2829254 CAGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATG-GC-CACACTCTCCCACTAC 2829311 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||| || || | || ||||| |||||||| || || | |||||| Sbjct 2829312 AATATCCAGAAAGAGTCCAC-CTGCACTTGGTGCTTGGTCTG-GGGGCGGC 2829360 >seq456 Length=605306 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| | ||||| ||| |||| || | || || || |||||||| Sbjct 383288 GACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAA 383347 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||||||| ||||||||||||||| || || | || ||||| |||| || Sbjct 383348 GATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTT 383407 Query 38457 CGTTTGAGAGGCGG 38470 || ||||| || || Sbjct 383408 CGCTTGAGGGGAGG 383421 >seq11601 Length=6222 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/231 (71%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||| |||| || | | ||| | || ||||| ||||||| |||| |||||| ||| Sbjct 4535 ATGTAAATCTTTATGATAACCTTGACCGGCAAGACCATCATACTCGAGGTCGAGCCCAGT 4476 Query 38304 GA---CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 || || | | || || |||| ||||||| || | ||||| || | | ||| Sbjct 4475 GATGCCACTGAG-AATGGC--AAAGCTAAAATCCAAGATGAGGAGGGCATCCTACCTGAC 4419 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| | || |||| ||||||||||||||||| || | || ||| ||| ||||||| Sbjct 4418 CAGCAGTGTCTTATTTTTGCGGGCAAACAGCTGGAGGATG-GC-CACACTCTCCGACTAC 4361 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||| || || | || ||||| |||||||| || || | |||||| Sbjct 4360 AATATCCAGAAAGAGTCCAC-CTGCACTTGGTGCTTGGTCTG-GGGGCGGC 4312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499947134536960