Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq378 141 4e-28 seq390 132 2e-25 seq95 109 2e-18 seq302 98.7 4e-15 seq74 98.7 4e-15 seq149 96.9 1e-14 seq391 84.2 9e-11 seq7 84.2 9e-11 >seq378 Length=1010976 Score = 141 bits (156), Expect = 4e-28 Identities = 346/524 (66%), Gaps = 3/524 (1%) Strand=Plus/Plus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| || | ||||| || | |||||| |||||| | |||||| | | | | ||||| | Sbjct 678554 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGAAAATTTAATGATCCT 678613 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 || ||| ||| | ||| | | ||| | | ||| | ||| || ||| || || Sbjct 678614 GTAGTGCAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAACCT 678673 Query 451202 TATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCT 451261 | | | || || ||||| || | ||| |||| ||||| ||||| || ||| Sbjct 678674 AAGGTGCTGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATCTCTTCT 678733 Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 ||||| || ||||||||||| || || || || | | | || || || || || Sbjct 678734 ATGGTACTAACTAAAATGAAGGAGACTGCTGAGGCTTTTTTAGGCCACCCTGTCACCAAT 678793 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| || || ||||||||||| | ||||| || || || || |||||| Sbjct 678794 GCTGTGATCACTGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCA 678853 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||| ||| | ||||| | ||||||| |||||||| ||||| ||||| | Sbjct 678854 GGTGTGATTGCGGGTCTCAATGTGTTAAGAATTATCAATGAACCCACAGCTGCTGCCATT 678913 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| ||| ||| | || | ||| | || | | | |||||| | Sbjct 678914 GCCTATGGCTTAGATAAAGC---AGGTCAGGGAGAGCGACATGTACTGATCTTTGATCTG 678970 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 |||||||| || |||| || | || | || || |||||| | ||||| |||||| Sbjct 678971 GGTGGAGGCACATTTGATGTGTCCATCCTGACCATAGACGATGGGATTTTTGAGGTAAAG 679030 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||| || || || | || || || || |||| || Sbjct 679031 GCCACAGCTGGGGACACCCACTTGGGTGGAGAGGACTTTGACAA 679074 >seq390 Length=2793443 Score = 132 bits (146), Expect = 2e-25 Identities = 269/399 (67%), Gaps = 3/399 (1%) Strand=Plus/Plus Query 451207 TCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266 ||||||| | || || || || || |||| ||| ||| || || | || |||||||| Sbjct 1663823 TCAAGTAGAATACAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCGTCTATGGT 1663882 Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 | | || || ||||| || | |||||| || |||| | |||| |||| | Sbjct 1663883 TTTGACAAAGATGAAGGATATTGCAGAAGCCTACCTTGGGAAGACCATTACAAATGCCAT 1663942 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 || || || || ||||| |||||||| | || |||| || ||||||||||| ||| Sbjct 1663943 CATGACAGTACCTGCTTACTTCAATGACTCTCAGTGGCAGGCTACTAAAGATGCTGGAAT 1664002 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 |||||||||| | ||||| | | ||||||| ||||| || || | |||||| | || || Sbjct 1664003 TATTGCTGGTCTCAATGTACCTAGAATTATCAATGAGCCAACTTCTGCTGCTATTGCTTA 1664062 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 ||| ||| || ||| | || ||| |||| | | | ||||| || || || Sbjct 1664063 TGGCTTAGACAA---AAAGGTTGGAGCTCAAAGAAATGTGCTGATCTTTGACTTGGGAGG 1664119 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || ||| |||| || | || || ||||||||||| | || |||| || | || Sbjct 1664120 TGGCACTTTTGATGTGTCAATTCTCACAGTTGAAGATGGGATTTTCAAAGTGAAATCTAC 1664179 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || ||||| ||| || ||||| |||| || Sbjct 1664180 AGCTGGGGACACTCACTTAGATGGAGAAGACTTTGACAA 1664218 Score = 132 bits (146), Expect = 2e-25 Identities = 359/536 (67%), Gaps = 19/536 (4%) Strand=Plus/Plus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----G 451951 |||| ||||| || || || |||||||| | ||| |||| ||||| | | | | Sbjct 1664509 ATGATATTGTCCTGGTGGGTGGTTCTACCCATATTTCTAAGATTCAGAAACTTCTACAGG 1664568 Query 451952 TCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCA 452011 |||||| | |||| |||| | | ||||||| | || |||||||| |||||||| Sbjct 1664569 ACTTCTT-TAATGGA--AAAAAAGTTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCT 1664625 Query 452012 TATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTT-CAGATGATGAAAAATTAGGAGA 452070 | |||||| || || || ||||| || ||| | || || || |||||| | ||| Sbjct 1664626 TTTGGTGCAGCTGTCCAGGCAGCCATCCTATCTGGAGACAAATC-TGAAAATGTTCAAGA 1664684 Query 452071 TATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGAT 452130 | | ||| | || |||| || ||||| | ||||| | ||||| ||||| ||||| || Sbjct 1664685 TTTGCTGCTGTTAAATGTTACTCCTCTTTTCCTTGGCATGGAAACTGCTGGCGGAATCAT 1664744 Query 452131 GACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTAC 452190 |||| | ||||| | ||| | |||| | || ||| || || || | ||| Sbjct 1664745 GACTGCCCTCATTAAGCACAATACTACCATTCTTACCAAGCAGACACAGACCTTCACTAC 1664804 Query 452191 AGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGA- 452249 || |||||| | | |||| ||||| || | |||||| || | || |||| Sbjct 1664805 CTACTCTGCTAACCAGTCTGCTGTACTCATTCAGGTTTATGAAGGTGAGTGGGCCATGAT 1664864 Query 452250 CACGAGATAATAATAAACTAGGAGAATTT--ACTCTTTCAAACATTCCTCCTATGCCAAG 452307 || | ||||| || || || | ||| |||| | | | | |||||| || || Sbjct 1664865 CAAG-GATAACAACCTGCTTGGCAAGTTTGAACTCAT--AGGCGTACCTCCTGCACCTAG 1664921 Query 452308 GGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAG 452367 || |||||| ||||||||||| | |||| | ||||| ||||| || || ||||| Sbjct 1664922 TGGTGTTCCTCAGATTGAAATTACTTTTGATATCGATGCTAATGGCATCCTCAATGTCTC 1664981 Query 452368 TGCAGTTGA-AAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAA 452421 ||| || || || | || ||| ||| |||| ||||||| || |||||||| || Sbjct 1664982 TGCTGTGGATAAGAGCA--TGGGAAACGAGAACAAAATTATCATCACTAATGACAA 1665035 >seq95 Length=5844521 Score = 109 bits (120), Expect = 2e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 3892776 GTTACTCATGCAGTTGTTACTGTACCGGCCTATTTCAATGATGCCCAACGCCAGGCAACC 3892835 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || |||||| | |||| || ||||| || Sbjct 3892836 AAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGAATCATCAATGAGCC 3892888 >seq302 Length=4907021 Score = 98.7 bits (108), Expect = 4e-15 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACT-GGTAAAACTATTACTCTTGATGTTGAATCATC 391108 ||| | ||||| || ||||| || | || || || |||||||| | |||||| | || Sbjct 2002269 ATGCAGATTTTTGTGAAAACCCTTATGAGGGAAGACCATTACTCTCAAGGTTGAACCCTC 2002210 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || |||| || || || || || ||||||||||||||||||||| |||| Sbjct 2002209 AGATACAATAGAAGATACAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTCATCA 2002150 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | || || ||||| ||||||||| | ||| | ||||| | Sbjct 2002149 GCAAAGACTTATCTTTGCTGGCAAGCAACTGGAAGATGGACATATCTTGTCTGATTACAG 2002090 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 2002089 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 2002051 >seq74 Length=9320355 Score = 98.7 bits (108), Expect = 4e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || ||||||||||| || || || ||||| ||||||| ||||| | ||||||||| Sbjct 9125554 CAGGCCACTAAAGATGCTGGCCAGATAGCTGGACTAAATGTGCTTCGGGTGATTAATGAA 9125495 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 || || || ||||||||||| ||||| |||| |||||| |||| Sbjct 9125494 CCCACGGCTGCTGCTCTAGCCTATGGTCTAGACAAATCAGAAGA 9125451 >seq149 Length=3750918 Score = 96.9 bits (106), Expect = 1e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || | || ||||| || |||||| | || Sbjct 2394108 ATGCAGATTTTCGTGAAAACCCTTACAGGGAAGATCATCACTCTCGAGGTTGAACCCTCG 2394049 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||| ||||||||||||||| Sbjct 2394048 GATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGAAATTCCTCCTGATCAG 2393989 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | | || | || || ||||| ||||||||| | ||| || | || || || Sbjct 2393988 CAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTACAAC 2393929 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||| | | || ||||| Sbjct 2393928 ATTCAAAAGTAGTCCACGCTTCA 2393906 >seq391 Length=1629883 Score = 84.2 bits (92), Expect = 9e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || || || | |||||||| |||||| | || Sbjct 1120465 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAGTCTTTCACTCTTGAGGTTGAACCCTCG 1120524 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 | || || ||| | | || || || || ||||||||||||| |||||||||||| Sbjct 1120525 GTTACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAACTCCTCCTGATCAG 1120584 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | | || | | || ||||| ||||| ||| | || ||| | || || | Sbjct 1120585 CAAAGACTGACCTTTGCTGACAAGCAACTGGAAGACGGACGTACCTTGTCTGACTACAGC 1120644 Query 391230 ATTGATAAGGATGCAACAC 391248 ||| | ||||| | |||| Sbjct 1120645 ATTCAAAAGGAGTCCACAC 1120663 >seq7 Length=17524079 Score = 84.2 bits (92), Expect = 9e-11 Identities = 141/203 (69%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || | || || ||||| | ||| | |||||| | || Sbjct 1247925 ATGCAAATTTTCGTGAAAACCCTTATAGGGAAGACTATCATTCTCGTGGTTGAAGCTTCA 1247866 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 | || | ||| | | || || || || |||||||||||||||||| ||||||| Sbjct 1247865 GTTACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTGATCAG 1247806 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || | || | || || ||||| |||||||| | || ||| | || || || Sbjct 1247805 CA--GATTGACCTTTGCTGGCAAGCAACTGGAAGATGGGCGTACCTTGTCTGACTACAAC 1247748 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 1247747 ATTCAAAAGGAGTCCACTCTTCA 1247725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974804720382152