Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq15 309 4e-79 seq378 244 1e-59 seq502 86.0 8e-12 seq311 84.2 3e-11 >seq15 Length=17796589 Score = 309 bits (342), Expect = 4e-79 Identities = 756/1137 (66%), Gaps = 18/1137 (2%) Strand=Plus/Plus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 |||||| || || |||| || ||||| || ||||||||||| ||||| || | || || Sbjct 4184920 GATGGCCGCCTGCACCGCGGCTCCGTAGGCCACCGCCTCATCAGGGTTGATGCTCTTGTT 4184979 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 ||| || || ||||| || ||||| | || | || || || || || || || || Sbjct 4184980 CAGCTCCTTGCCGTTGAAGAAATCCTGCAGCAGCTTCTGGATCTTAGGAATGCGGGTGGA 4185039 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 || || |||| ||||| || | | | || || | ||| | ||| || || | Sbjct 4185040 GCCTCCCACCAGCACGATCTCCTGGATCTGGCCCTTGTCAAGCTTGGCGTCGCGCAGCGC 4185099 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || || ||||| |||| | | ||||||| || || |||||||| || || Sbjct 4185100 CTTCTCCACAGGCTCCAGAGTTCCGCGGAACAGATCGGCGTTGAGCTCCTCAAAGCGGGC 4185159 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 ||||| ||||| || ||||| || || || ||||| | ||| || ||||| ||| | | Sbjct 4185160 GCGGGTGATGGACGTGTAGAAGTCCACACCCTCGTAGAGCGAGTCGATTTCGATGCTGGC 4185219 Query 7321 TTGTGCCGTCGAAGATAACGTT-CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAA 7379 |||| | ||| | ||| | | ||||| |||||||| || || || || | || || | Sbjct 4185220 CTGTGTGGACGA-GCTAAGGGTGCGCTTGGCGCGCTCGCAGGCAGTGCGAAGCCGCCGCA 4185278 Query 7380 GGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT 7439 |||||| ||| ||| || ||||| || || || || || || || | | || Sbjct 4185279 CCGCACGCTTGTTGGGCCCAATGTCCTTCTTGTGCTTGCGCTTGAATTCCTCCGCCAGGT 4185338 Query 7440 GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTT 7499 | | | | | ||||| || || || |||| ||| || || || || || | | Sbjct 4185339 GGCTCACCATGCGGTTGTCGAAGTCCTCGCCGCCCAGGTGGGTGTCGCCGGCTGTGGACT 4185398 Query 7500 TGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCA 7559 | || || ||||| || | || || | | | || || || || || || || |||| Sbjct 4185399 TCACCTCGAAGATGCCGTCGTCGATCGTCAGGATGGACACGTCGAAGGTGCCGCCGCCCA 4185458 Query 7560 GGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTCTTATCGAGACCGTACG 7613 ||||||| ||||| |||||| | ||| || | | ||||| || || || || | Sbjct 4185459 GGTCAAAGATGAGCACGTTCTTCTCGCCGCCCGCGCAGCCCTTCTTGTCCAGGCCATAGG 4185518 Query 7614 CGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG 7673 |||| |||||||| || || || || || || || || ||| ||||| | || || Sbjct 4185519 CGATGGCCGCCGCTGTGGGCTCGTTGATGATGCGCAGCACGTTGAGGCCCGTGATGGTGC 4185578 Query 7674 CCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCG 7733 | || |||||||| || || || ||||||||||| || ||||| ||||| || | ||||| Sbjct 4185579 CGGCGTCTTTCGTGGCCTGGCGCTGCGAATCGTTGAAATAGGCAGGGACAGTGATGACCG 4185638 Query 7734 CGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCA 7793 || | || || || || || | ||| ||||| || ||||| ||||| || |||| Sbjct 4185639 CGCTCTGCACCTTGCCCCCCAGGTAGGCTTCGGCGATCTCCTTCATCTTGGTCAGCACCA 4185698 Query 7794 TCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTT-AAAATCAACTTCAATC 7852 | || || ||||| || | ||| || || || || || | ||| || | | | Sbjct 4185699 TGGACGAGATCTCCTCGGGGTAGAACGCCTTGGTCTCCCCCTTGTAGCTCACCTGC-ACC 4185757 Query 7853 ATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGG 7912 |||| || ||| | || ||| |||| | | ||| | ||||| || || Sbjct 4185758 TTGGGCTTGTCC---CCGTCGCTGATCACCTGGAAAGGCCAGTGCTTCATGTCCGACTGC 4185814 Query 7913 ACCTGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTT 7971 | |||| | |||| ||||| | |||||| || | ||| || || || | ||||| | Sbjct 4185815 A-CTGTAGCGTCCTCGAACTTCCGTCCGATCAGCCTCTTGGCGTCGAAGATGGTGTTGGT 4185873 Query 7972 GGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGT 8031 |||||||||||| |||||||| || ||||| ||||| || || || | || || Sbjct 4185874 GGGGTTCATGGCCACCTGGTTCTTGGCGGCGTCACCGATGAGGCGCTC---GGTGTCAGT 4185930 Query 8032 AAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 ||| || ||||| ||||| || || || || |||||||| ||||| || || || Sbjct 4185931 AAAGGCAACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTGGCAATGATCTCCACCTT 4185990 Query 8092 GTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | | ||| |||| || |||||||| || || || || | || || ||||| || Sbjct 4185991 CCCATGTTGGAAGACCCCCACGCACGAGTAGGTGGTGCCCAGGTCGATGCCGATAGC 4186047 >seq378 Length=1010976 Score = 244 bits (270), Expect = 1e-59 Identities = 778/1195 (65%), Gaps = 16/1195 (1%) Strand=Plus/Minus Query 6959 GACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTT 7018 |||| || | ||| ||||| | | |||||| || || ||| | || ||| | Sbjct 679569 GACAAGGGAGCCACATCCAACAAAAGCAGGTCCTGTACCTTTTCAGACTTGTCCCCCATC 679510 Query 7019 AAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTA 7078 || ||||| || || || | ||||| || || || |||||||| ||||| || | || Sbjct 679509 AATATGGCTGCCTGTACTGCAGCCCCATAGGCCACTGCCTCATCTGGGTTGATGCTCTTG 679450 Query 7079 TTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTC 7138 || || || ||||| ||| | ||| | || | || | || ||||| || || Sbjct 679449 TTGAGGTCGCGCCCGTTGAAAAAGTCCTGCAGCAGCTTCTGCACCTTAGGGATGCGGGTG 679390 Query 7139 GATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGT 7198 || || || || ||||| || |||| | ||| | || || ||||| | || ||||| Sbjct 679389 GAGCCTCCTACTAAAACAATGTCATGAATTTTAGCCTTGTCCATCTTGGCATCACGAAGA 679330 Query 7199 GTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGT 7258 | || || ||||| |||| | | |||| || ||||| |||||||| || Sbjct 679329 GCCTTCTCTACAGGCTCCAGAGTGCCCCTAAACAGATCTGCACACAACTCCTCAAACCGG 679270 Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318 || | |||||||||||| ||||| |||| || || || | ||||| ||||| | | | Sbjct 679269 GCTCTGGTAATGGATGTGTAGAAGTCAATTCCTTCATAAAGTGAATCGATTTCCAAGTTG 679210 Query 7319 GTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378 | || | | || || | || | ||| || | ||| || || || || | || | Sbjct 679209 GCCTGGGTGCTGGACGACAGGGTCCTCTTGGCCCTCTCGCAGGCAGTGCGCAGCCGCCTC 679150 Query 7379 AGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAG 7438 | ||| ||| ||| | || || ||||| || || | || ||||| || |||| Sbjct 679149 ACGGCTCGCTTGTTCTGGCTGATGTCCTTCTTGTGCTTCCTCTTGAACTCCTCCACGAAG 679090 Query 7439 TGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCT 7498 || | || || || || || || ||||||||||| || ||||| || || || Sbjct 679089 TGGTTCACCAGCCTGTTGTCAAAGTCCTCTCCACCCAAGTGGGTGTCCCCAGCTGTGGCC 679030 Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 || || ||||| || || | || ||| | | | || |||||||| || || |||||| Sbjct 679029 TTTACCTCAAAAATCCCATCGTCTATGGTCAGGATGGACACATCAAATGTGCCTCCACCC 678970 Query 7559 AGGTCAAAAATGAGTACGT-TCG-TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGA 7616 || ||||| || ||||| | ||| | || | | | | ||||| | || || || | Sbjct 678969 AGATCAAAGATCAGTACATGTCGCTCTCCCTGACCTGCT--TTATCTAAGCCATAGGCAA 678912 Query 7617 TAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCC 7675 | || || || || |||||||| ||||| | || ||| || || || ||||| | Sbjct 678911 TGGCAGCAGCTGTGGGTTCATTGATAATTCTTAACACA-TTGAGACCCGCAATCACACCT 678853 Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || || ||||| || || || || ||||| || || || | || || Sbjct 678852 GCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAATAGGCTGGCACAGTGATCACAGCA 678793 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | ||||| | || | | | | || || | || |||||||| || || ||||| Sbjct 678792 TTGGTGACAGGGTGGCCTAAAAAAGCCTCAGCAGTCTCCTTCATTTTAGTTAGTACCATA 678733 Query 7796 GATGAAATCTCTTCA--GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCA 7853 || || || || ||| | | || || ||| | || || || | || | | Sbjct 678732 GAAGAGATTTCCTCAGGGTAGAAAGCTTTTT--TCTCCCCTTTGTAGGACACCAGCACCT 678675 Query 7854 TGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGA 7913 | ||||| || | | | ||| || | | | | |||| ||||||||| ||| | Sbjct 678674 TAGGTTT-GCCTC--CTTCATTGATTACTTGAAAAGGCCAAAGTTTCATATCTGATTGCA 678618 Query 7914 CCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGG 7973 | | || ||| ||||| || || ||||| || |||||||| || ||||| | || Sbjct 678617 CTACAGGATCATTAAATTTTCTGCCAATCAGACGTTTGGCATCAAAGACAGTGTTCTGGG 678558 Query 7974 GGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAA 8033 | ||||||||| |||||||| || || |||||||| || || || | || || | Sbjct 678557 GATTCATGGCTACCTGGTTCTTGGCGGCATCCCCGATGAGCCGCTC---GGTGTCGGTGA 678501 Query 8034 ACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGT 8093 |||| ||||| ||||| || || || || |||||||| || || || || || | Sbjct 678500 ACGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACCTTGC 678441 Query 8094 CGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||| || | || || |||||||| || || || || | || || || || || Sbjct 678440 CGTGCTGGAACACCCCCACGCACGAGTAGGTGGTGCCCAGGTCGATGCCAATGGC 678386 >seq502 Length=1078598 Score = 86.0 bits (94), Expect = 8e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 || || || | ||| || || ||||| || || ||||| ||||| ||||| | ||| ||| Sbjct 64197 TTTTTGTCTAAACCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCTAAGTACA 64256 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || |||||||||||| | |||||||| || || || || || || || || ||||| Sbjct 64257 -TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGCCGCTGAGAGTCATTGAAGTA 64315 Query 7714 GGCCGGGACCGTTACGACCGC 7734 || || || || || || || Sbjct 64316 AGCAGGTACTGTGACCACAGC 64336 >seq311 Length=2724376 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 105280 GTAAACTCCAGAATTTCTGTACACAAATTTGATG-ATTTAATCGTACCAACGTGTTTATG 105338 ||| |||| | |||||||||||| | ||| || |||| || || || | || | || Sbjct 2479364 GTATACTCTACTATTTCTGTACAC-AGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTG 2479306 Query 105339 GTTCGACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTG 105398 ||| ||| |||||| | |||||||| ||||| |||||||| || || ||| | || Sbjct 2479305 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCAGTCTG 2479246 Query 105399 GGATTTAATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTT 105443 || | |||||| || | ||||| || | |||| ||||||||| Sbjct 2479245 AGACTCAATAATGGCGTACCAAAGCTGCTGAGCTTTTACAACTTT 2479201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634846243958960