Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq44 154 3e-32 seq302 114 3e-20 seq434 102 2e-16 seq7 102 2e-16 seq456 93.3 9e-14 seq12 84.2 5e-11 >seq44 Length=10323257 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| ||||| |||||||| | |||||| | |||||||| Sbjct 7626579 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 7626638 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || |||||||| || |||||||| || || || Sbjct 7626639 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGG 7626698 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| ||||||||| ||||| | ||| Sbjct 7626699 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCCACTTCCAGGGTGATGGTC 7626755 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 7626756 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787 Score = 145 bits (160), Expect = 2e-29 Identities = 163/217 (75%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || || || || || |||||||| ||||| |||||||| | |||||| | |||||| Sbjct 7626804 AAGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 7626863 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || |||||||| ||||| ||||| || | || ||||| || || || ||||| || || Sbjct 7626864 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTATCC 7626923 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACC 195105 || || || ||| || |||||||||||||| |||| ||||| || ||||| | Sbjct 7626924 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTTGGCTCCACCTCCAGGGTGATG 7626980 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| || |||| || || ||||| | |||||||| Sbjct 7626981 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTT 7627017 >seq302 Length=4907021 Score = 114 bits (126), Expect = 3e-20 Identities = 108/135 (80%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCT 194981 |||||||| ||||| |||||||||||||| |||||||| ||||||| | ||||| | | Sbjct 2002051 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGATATGT 2002110 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || |||||||||| ||| || | |||||||| ||||| Sbjct 2002111 -CCATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTC 2002169 Query 195042 TTTGTCTTGAATTTT 195056 || || || || || Sbjct 2002170 CTTATCCTGGATCTT 2002184 >seq434 Length=2484400 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| | |||||||||||| |||||||||||||| || | ||||| Sbjct 1040657 AGTCTCAACACAAGATTAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGAGTATAT 1040716 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || | |||| || | ||| || || |||||||| ||||| Sbjct 1040717 CCATCTTCCAGTTGCTTGCCAGGAAAGAGCAGCCTTTGCTGATCAGGAGGAATTCCTTCC 1040776 Query 195043 TTGTCTTGAATTTT 195056 || || || || || Sbjct 1040777 TTATCCTGCATCTT 1040790 >seq7 Length=17524079 Score = 102 bits (112), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCT 194981 |||||||| ||| |||||||||||||| |||||||| ||||| || | |||| || | Sbjct 1247710 AGTCTCAACGCAACATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAG-GTACG 1247768 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||||||| || ||||| || || ||| | | || || || || | |||||| ||||| Sbjct 1247769 CCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAATC--TGCTGATCAGAAGGAATTCCTTC 1247826 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || ||| || || || | || | ||| ||| || | || | Sbjct 1247827 CTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTAACTGAAGCTTCAACCACGAGAAT 1247886 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||| | | ||||| ||||| | |||||| Sbjct 1247887 GATAGTCTTCCCTATAAGGGTTTTCACGAAAATTTGCAT 1247925 >seq456 Length=605306 Score = 93.3 bits (102), Expect = 9e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||| |||| || || | ||||||||| Sbjct 383403 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 383344 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||||| || || ||||| || | || ||||| || || ||||| || ||||| Sbjct 383343 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 383288 >seq12 Length=16976894 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || ||||| || || | |||| | |||| || ||||| Sbjct 6395800 GTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTCTCCAGCTG 6395741 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || | || || || ||||| || || ||||| || |||||||| |||| Sbjct 6395740 TTTGCCGGCAAAACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGGTTTT 6395681 Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080 |||||||| || |||||||| Sbjct 6395680 AGCTTTGACGTTTTCGATGGTGTC 6395657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108968515380098