Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq12 102 5e-17 seq44 96.9 2e-15 seq14 96.9 2e-15 seq456 93.3 3e-14 seq102 93.3 3e-14 >seq12 Length=16976894 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| || |||||||| || | | || ||| ||| Sbjct 6395805 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTCTCC 6395746 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| | || || |||||||| | || | ||||||||||| Sbjct 6395745 AGCTGTTTGCCGGCAAAACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 6395686 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 | || ||||||| | | || | |||| || || || ||| || ||||| || Sbjct 6395685 GTTTTAGCTTTGACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTCTTG 6395626 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| | || |||||||||||||| ||||| Sbjct 6395625 CCCATCAGGGTCTTCACAAAGATTTGCAT 6395597 >seq44 Length=10323257 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| || || ||||| | || |||| |||||||| || || ||||| Sbjct 7626597 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 7626656 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | || ||||| || ||||| || || || Sbjct 7626657 ATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCAC--AT 7626714 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || || || || | ||| ||||| || || || || ||||||| Sbjct 7626715 TCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCA 7626774 Query 34969 CAAAGATCTGCATA 34982 | |||||||||||| Sbjct 7626775 CGAAGATCTGCATA 7626788 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| || || ||||| | || |||| |||||||| || || ||||| Sbjct 7626825 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 7626884 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| || || || Sbjct 7626885 ATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTCAC--AT 7626942 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | ||| || || | ||| ||||| || || || || ||||||| Sbjct 7626943 TCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCA 7627002 Query 34969 CAAAGATCTGCATATT 34984 | ||||| ||||| || Sbjct 7627003 CGAAGATTTGCATTTT 7627018 >seq14 Length=16290508 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||| || |||||||| |||| | || ||| |||||||||| || ||||| Sbjct 4376025 TCTTTCCAGATATTATAGTCTGAAAAAGTGCGGCCATTCTCCAGCTGTTCGCCTGCAAAA 4376084 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| || |||||||| | | | ||||||||||| || || ||||||| | Sbjct 4376085 ATTAGACGCTGCTGGTCAGGTGTGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTT 4376144 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | | | |||| || ||| || |||| || ||||| |||||||| ||| |||| ||| Sbjct 4376145 TCAGTGGTATCACTGGGCTCGACCTCGAGTGTGATGGTCTTTCCCGTCAGAATCTTGACA 4376204 Query 34971 AAGATCTGCAT 34981 || || ||||| Sbjct 4376205 AACATTTGCAT 4376215 >seq456 Length=605306 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||| ||| | ||| |||||||| ||||| ||||| || Sbjct 383421 CCTCCCCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 383362 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| ||||||||||| || || | |||||||| | || Sbjct 383361 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 383302 Query 34875 ACCCCCTCCTTGTC 34888 | ||||||||||| Sbjct 383301 ATGCCCTCCTTGTC 383288 >seq102 Length=6558185 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||||||||| ||||| || || | || | || ||| Sbjct 2020075 ACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCCTCC 2020134 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || | ||| |||| || || | || |||||||| | Sbjct 2020135 AGCTGTTTGCCCGCAAAAATCAGACACTGCAGGTCATGTGGGATGCCTTCCTTGTCTCGG 2020194 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||||||| | | | | || || ||| || | | || ||||| || Sbjct 2020195 ATTTTAGCTTTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGTAATGGTCTTG 2020254 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| | || |||||||| ||||| ||||| Sbjct 2020255 CCCATCAGTGTCTTCACGAAGATTTGCAT 2020283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324490795099632