Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq26467 116 4e-21 seq311 116 4e-21 seq222 116 4e-21 seq105 114 1e-20 >seq26467 Length=4180 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || || || ||||||||||| || || Sbjct 2944 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 2885 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||||| ||| ||||||||||| || |||||||| | |||| | ||| ||| Sbjct 2884 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 2825 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 2824 TTTCTTATACCATA 2811 >seq311 Length=2724376 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || || || ||||||||||| || || Sbjct 2492909 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 2492850 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||||| ||| ||||||||||| || |||||||| | |||| | ||| ||| Sbjct 2492849 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 2492790 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 2492789 TTTCTTATACCATA 2492776 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 2495129 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 2495070 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||| ||| ||||||| | | || Sbjct 2495069 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAACTGCCATTTTGAGAACGGTTT 2495010 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 2495009 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 2494961 >seq222 Length=2514393 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| || |||||||| ||| Sbjct 507918 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 507977 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 ||||||||||||| |||||| ||||| || ||||| || ||||| || || || || || Sbjct 507978 AACCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCCACAGCAGCGAAGGCC 508037 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 508038 ACCACTCTTTCCCC 508051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||| ||||| || ||| |||| Sbjct 501470 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATATTTTCC 501529 Query 18733 ATAAAATCAAATGGATTTT 18751 |||||||| || ||||||| Sbjct 501530 ATAAAATCGAAGGGATTTT 501548 >seq105 Length=3566936 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| || | |||||||||||||| | ||| | Sbjct 2109091 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCT 2109032 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || ||||||| Sbjct 2109031 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCAAAAG 2108972 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 2108971 CGACAACACGTTCTCC 2108956 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || || ||||||| | ||||||||||||| || || ||| |||||||| Sbjct 2110528 TTAGAAGTCGGCATCCAAGGTAAAAGAATTCTCTG--TTGGACCGGACATCACTCCCATC 2110471 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| ||| | ||||| || |||||||| |||||||| || || | ||| || Sbjct 2110470 TTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTTTTCCCTTCCAGTGAAATGTTC 2110411 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 ||||| || ||||||||||||| ||| Sbjct 2110410 TCCATGAAGTCAAATGGATTTTCTAC 2110385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561855190562160