Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq1138 84.2 3e-11 seq902 84.2 3e-11 >seq1138 Length=14514 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||||||||||||||| || || | || Sbjct 10221 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACTGCA 10280 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || ||||| |||||||| || || || | || || | | || || || || Sbjct 10281 GCCCACTTCTGAAAGGTCCCATCCCCGGCAGGCCTGGTCTCCACAAGTTCCGTGTCCTGC 10340 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || ||||| | | ||| || | | || ||||| || || || |||| Sbjct 10341 ATCTGGTCCTCCCCGTCACACTGCCAGGTCAAAATGATCTCAGCAGGGTAGAAGCCCAGG 10400 Query 14358 GCCCAGCAC 14366 ||||||||| Sbjct 10401 GCCCAGCAC 10409 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||||||||||||||| || || | || Sbjct 13283 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACTGCA 13342 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || ||||| |||||||| || || || | || || | | || || || || Sbjct 13343 GCCCACTTCTGAAAGGTCCCATCCCCGGCAGGCCTGGTCTCCACAAGTTCCGTGTCCTGC 13402 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || ||||| | | ||| || | | || ||||| || || || |||| Sbjct 13403 ATCTGGTCCTCCCCGTCACACTGCCAGGTCAAAATGATCTCAGCAGGGTAGAAGCCCAGG 13462 Query 14358 GCCCAGCAC 14366 ||||||||| Sbjct 13463 GCCCAGCAC 13471 >seq902 Length=28348 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | || |||||||| ||| ||||||||||| || || | || Sbjct 22508 CCCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACTGCA 22449 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || |||||||| ||||| || | || || | | || || || || Sbjct 22448 GCCCACTTCTGGAAGGTCCCATCCCCAGCAGGCCTGGTCTCCACAAGTTCCGTGTCCTGG 22389 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || ||||| ||||| || | ||| || | | || ||||| || || || |||| Sbjct 22388 GTCTGGTCTTCCCCGTCACGCTGCCAGGTCAAAATGATCTCAGCAGGGTAGAAGCCCAGG 22329 Query 14358 GCCCAGCAC 14366 ||||||||| Sbjct 22328 GCCCAGCAC 22320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628999283152240