Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq482 178 2e-39 seq126 98.7 2e-15 >seq482 Length=938169 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 234859 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 234800 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || | || || |||||||| || | |||||| |||||| Sbjct 234799 TCCCGGAGGAGGCCGGCAGTGCTCGAGAGCCCTGCGTTCTCTGCCTTGAGTGTCTTCACC 234740 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || ||||| || ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 234739 TTGTCCTCTAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCGGCCAGC 234680 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 234679 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 234620 Query 241625 GAC 241627 ||| Sbjct 234619 GAC 234617 >seq126 Length=5094692 Score = 98.7 bits (108), Expect = 2e-15 Identities = 128/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| || ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 3629171 AGGACCTTTTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCTGTGGACGCCAG- 3629113 Query 241475 CCTGCGTTGTCAGACT--TGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 || ||| || | || | ||| ||||||||||||||| || |||| |||||| |||| Sbjct 3629112 -CTCCGTATTCTGGCTCTTAAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCA 3629054 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTC 241587 | ||||| ||||||||||| ||| || | |||||| || || | ||| || || Sbjct 3629053 GCTTGCGTTTGCGGCATTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTC 3628999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931112515688960