Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq28161 145 2e-30 seq30356 134 4e-27 seq28435 125 2e-24 seq35096 96.9 1e-15 >seq28161 Length=442 Score = 145 bits (160), Expect = 2e-30 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 7009 GGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGC 7068 ||||| ||||| | | ||||||||||||| |||||||| || | | ||| |||| Sbjct 196 GGCCCAGTCGGAACCCTTTTCTGGAGTATTCCCCATGACTTGCAATGTACCCCTGATCGC 137 Query 7069 CCGCCTGAATGAACTTGGGACCCAGCTTAACCGCGAGGTCAGTACCAGCGGCACCATTCA 7128 |||||||||||| ||||| || |||||||||| |||||| || |||||| || || Sbjct 136 CCGCCTGAATGACCTTGGCACTCAGCTTAACCCAGAGGTCCCCACGGACGGCACGATCCA 77 Query 7129 GGAACTGACGATGCGTATTGCTGAGCTTGAAGAGGAACTGGATGGCAATGCCGGGTCAGT 7188 |||| | ||||||| || | ||| || ||| |||| ||||||| ||||| | || | Sbjct 76 GGAAATAACGATGCATACTTATGACCTAGAAAAGGAGATGGATGGTGATGCCAGTTCGAT 17 Query 7189 TGACGGTGAAAACGG 7203 ||||||||||||||| Sbjct 16 TGACGGTGAAAACGG 2 >seq30356 Length=1561 Score = 134 bits (148), Expect = 4e-27 Identities = 266/396 (67%), Gaps = 13/396 (3%) Strand=Plus/Plus Query 7017 CGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGA 7076 |||| |||||||||| | ||||||| |||| | | |||| |||| ||||||| Sbjct 1036 CGGGGCACCTTTCTGCAACATTTCCCCCGACACCACT-GTGTGGCTGATCGCTCGCCTGA 1094 Query 7077 ATGAACTTGGGACCCAG-CTTAACCGCGAGGTCAGTACCAGCGGCACCATTCAGGAACTG 7135 |||| |||||||| || ||||||| || ||||| ||||||||| ||||||||||| Sbjct 1095 ATGACCTTGGGACTCAAACTTAACCCCGCGGTCACCACCAGCGGCTG-ATTCAGGAACTT 1153 Query 7136 ACGATGCGTATTGCTGAGCTTGAAGAGGAACTGGATGGCAATGCCGGGTCAGTTGACGGT 7195 || ||| ||||||||| | ||| | || |||| ||| ||| ||| | |||| | Sbjct 1154 ACTGTGCCTATTGCTGATGTGGAACACGAGCTGGGTGGTGATGGAGGGGCGAGTGACCGA 1213 Query 7196 GAAAACGGCGTGCAGAATGCTTCCGACA---------GCANNNNNNNNNNNNNNNNNNAT 7246 || | | | |||||| |||||| || | Sbjct 1214 GACCAGTGAGAAAGGAATGCGCCCGACAAAGCCGGGGGCCGGAACATGACCCACAGCGAC 1273 Query 7247 GTTGCTAACGTGGCAAAAGTAAAAACGGAATCGGCCACAACGGGTGACCTGGTATCAGTA 7306 || | | | |||| |||||| ||| ||| |||||||| ||||| |||||| || Sbjct 1274 GTATATGGCACCGAAAAACTAAAAATCGAAGCGGTCACAACGGATGACCGAGTATCAATA 1333 Query 7307 GAAACGCTGGCCACCCTGCATATTGACGCTCTGCATGCCACGCGTAA-CGAGCCGGTATC 7365 || |||||| ||| || | ||| || | || || ||||||||||| | || | || | Sbjct 1334 GAGGCGCTGGTGACCTTGTACATTAACACGCTTCACGCCACGCGTAATCAAGTCCGTGCC 1393 Query 7366 TATCGTAGAGCCTGGTGTGATTATCCGCGTATCTGA 7401 ||| || |||||||||| |||||||||||| |||| Sbjct 1394 TATTGTCTAGCCTGGTGTCATTATCCGCGTAACTGA 1429 >seq28435 Length=83722 Score = 125 bits (138), Expect = 2e-24 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 7049 GAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAACTTGGGACCCAGCTTAACCGCGAGGTC 7108 || ||| |||| ||| |||| ||||||||||| ||||| || | ||||||||||||||| Sbjct 83589 GACAAACAAAACCTGATCGCTCGCCTGAATGACCTTGGCACAAATCTTAACCGCGAGGTC 83648 Query 7109 AGTACCAGCGGCACCATTCAGGAACTGACGATGCGTATTGCTGAGCTTGAAGAGGAACTG 7168 | ||||| ||| | ||||||||| | |||||| || ||||||| || ||| |||| ||| Sbjct 83649 ATCACCAGGGGCGCGATTCAGGAATTTACGATGGGTTTTGCTGATCTGGAACAGGAGCTG 83708 Query 7169 GATGGCAATGCC 7180 ||||| ||||| Sbjct 83709 GATGGTGATGCC 83720 >seq35096 Length=1097 Score = 96.9 bits (106), Expect = 1e-15 Identities = 162/227 (71%), Gaps = 22/227 (10%) Strand=Plus/Plus Query 7282 CACAACGGGTGACCTGGTATCAGTAGAAACGCTGGCCACCCTGCATATTGAC-GCT---- 7336 |||||||| ||||| ||||||||||||||| |||| ||| |||| | || | ||| Sbjct 778 CACAACGGATGACCGGGTATCAGTAGAAACTCTGGTGACCTTGCA-ACTGTCTGCTCAAG 836 Query 7337 -------CTGCATGCCACGCGTAACGAGCCGGTATCTATCGTAGAGCC-TGGTGTGATTA 7388 || || ||||| |||||| || | || ||||| ||| |||| |||||| ||| Sbjct 837 ACCATCGCTTCACGCCACACGTAACCAGTCTGTGTCTATTGTACAGCCTTGGTGTCGTTA 896 Query 7389 TCCGCGTATCTGA---ACAGGATGCCGACGACTTGATCGCAAAGGG-GCTGGCTTTCGAA 7444 ||||||| |||| ||||| | | | ||||||| | ||| ||||| ||| Sbjct 897 TCCGCGTGACTGACGTACAGGCTAACTA--ACTTGATTTCTCGGGGCGCTGGGCCGGGAA 954 Query 7445 GTCTGA-AGGGGGCCACATGGCTGATTTCGATAATC-TCTTTGACGA 7489 ||||| ||||||| |||| ||||| ||| |||| ||||||| || Sbjct 955 ATCTGACGGGGGGCCTAATGGATGATTCCGACAATCTTCTTTGATGA 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141817588612236