Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq28161 149 2e-31 seq28435 129 2e-25 seq30356 107 6e-19 seq35096 87.8 5e-13 >seq28161 Length=442 Score = 149 bits (164), Expect = 2e-31 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 7009 GGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGC 7068 ||||| ||||| | | ||||||||||||| |||||||| || | | ||| |||| Sbjct 196 GGCCCAGTCGGAACCCTTTTCTGGAGTATTCCCCATGACTTGCAATGTACCCCTGATCGC 137 Query 7069 CCGCCTGAATGAACTTGGGACCCAGCTTAACCGCGAGGTCAGTTCCAGCGGCACCATTCA 7128 |||||||||||| ||||| || |||||||||| |||||| | |||||| || || Sbjct 136 CCGCCTGAATGACCTTGGCACTCAGCTTAACCCAGAGGTCCCCACGGACGGCACGATCCA 77 Query 7129 GGAACTAACGATGCGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCATCTCGGT 7188 |||| ||||||||| || | ||| || ||| ||||| ||||||| || |||| ||| | Sbjct 76 GGAAATAACGATGCATACTTATGACCTAGAAAAGGAGATGGATGGTGATGCCAGTTCGAT 17 Query 7189 TGACGGTAAAAACGG 7203 ||||||| ||||||| Sbjct 16 TGACGGTGAAAACGG 2 >seq28435 Length=83722 Score = 129 bits (142), Expect = 2e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 7049 GAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAACTTGGGACCCAGCTTAACCGCGAGGTC 7108 || ||| |||| ||| |||| ||||||||||| ||||| || | ||||||||||||||| Sbjct 83589 GACAAACAAAACCTGATCGCTCGCCTGAATGACCTTGGCACAAATCTTAACCGCGAGGTC 83648 Query 7109 AGTTCCAGCGGCACCATTCAGGAACTAACGATGCGTATTGCTGAGCTTGAAGAGGAGCTG 7168 | |||| ||| | ||||||||| | |||||| || ||||||| || ||| |||||||| Sbjct 83649 ATCACCAGGGGCGCGATTCAGGAATTTACGATGGGTTTTGCTGATCTGGAACAGGAGCTG 83708 Query 7169 GATGGAGACGCCAT 7182 ||||| || ||||| Sbjct 83709 GATGGTGATGCCAT 83722 >seq30356 Length=1561 Score = 107 bits (118), Expect = 6e-19 Identities = 265/401 (66%), Gaps = 14/401 (3%) Strand=Plus/Plus Query 7017 CGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGA 7076 |||| |||||||||| | ||||||| |||| | | |||| |||| ||||||| Sbjct 1036 CGGGGCACCTTTCTGCAACATTTCCCCCGACACCACT-GTGTGGCTGATCGCTCGCCTGA 1094 Query 7077 ATGAACTTGGGACCCAG-CTTAACCGCGAGGTCAGTTCCAGCGGCACCATTCAGGAACTA 7135 |||| |||||||| || ||||||| || ||||| |||||||| ||||||||||| Sbjct 1095 ATGACCTTGGGACTCAAACTTAACCCCGCGGTCACCACCAGCGGCTG-ATTCAGGAACTT 1153 Query 7136 ACGATGCGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCATCTCGGTTGACGGT 7195 || ||| ||||||||| | ||| | ||||||| ||| || | || |||| | Sbjct 1154 ACTGTGCCTATTGCTGATGTGGAACACGAGCTGGGTGGTGATGGAGGGGCGAGTGACCG- 1212 Query 7196 AAAAACGGCGTGCA--GAATGCTTCCGAC--AGCANNNNNNNNNNNNNNNNNNNNNNNNN 7251 | | | | | | | |||||| ||||| ||| Sbjct 1213 -AGACCAGTGAGAAAGGAATGCGCCCGACAAAGCCGGGGGCCGGAACATGACCCACAGCG 1271 Query 7252 NNNTGT-TGCTAACGTGGCAAAAGTAAAAACGGAATCGGCCACAACGGGTGACCTGGTAT 7310 | | || | | | |||| |||||| ||| ||| |||||||| ||||| |||| Sbjct 1272 ACGTATATGGCACC---GAAAAACTAAAAATCGAAGCGGTCACAACGGATGACCGAGTAT 1328 Query 7311 CAGTAGAAACGCTGGCCACCCTGCATATTGACGCTCTGCATGCCACGCGTAA-CGAACCG 7369 || |||| |||||| ||| || | ||| || | || || ||||||||||| | | | Sbjct 1329 CAATAGAGGCGCTGGTGACCTTGTACATTAACACGCTTCACGCCACGCGTAATCAAGTCC 1388 Query 7370 GTATCCATCGTAGAGCCTGGTGTGATTATCCGCGTATCTGA 7410 || | || || |||||||||| |||||||||||| |||| Sbjct 1389 GTGCCTATTGTCTAGCCTGGTGTCATTATCCGCGTAACTGA 1429 >seq35096 Length=1097 Score = 87.8 bits (96), Expect = 5e-13 Identities = 160/227 (70%), Gaps = 22/227 (10%) Strand=Plus/Plus Query 7291 CACAACGGGTGACCTGGTATCAGTAGAAACGCTGGCCACCCTGCATATTGAC-GCT---- 7345 |||||||| ||||| ||||||||||||||| |||| ||| |||| | || | ||| Sbjct 778 CACAACGGATGACCGGGTATCAGTAGAAACTCTGGTGACCTTGCA-ACTGTCTGCTCAAG 836 Query 7346 -------CTGCATGCCACGCGTAACGAACCGGTATCCATCGTAGAGCC-TGGTGTGATTA 7397 || || ||||| |||||| | | || || || ||| |||| |||||| ||| Sbjct 837 ACCATCGCTTCACGCCACACGTAACCAGTCTGTGTCTATTGTACAGCCTTGGTGTCGTTA 896 Query 7398 TCCGCGTATCTGA---ACAGGATGCCGACGACTTGATCGCAAAGGG-GCTGGCTTTCGAA 7453 ||||||| |||| ||||| | | | ||||||| | ||| ||||| ||| Sbjct 897 TCCGCGTGACTGACGTACAGGCTAACTA--ACTTGATTTCTCGGGGCGCTGGGCCGGGAA 954 Query 7454 GTCTGA-AGGGGGCCACATGGCTGATTTCGATAATC-TCTTTGACGA 7498 ||||| ||||||| |||| ||||| ||| |||| ||||||| || Sbjct 955 ATCTGACGGGGGGCCTAATGGATGATTCCGACAATCTTCTTTGATGA 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144987429384384