Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq390 167 2e-35 seq206 149 4e-30 seq502 120 2e-21 seq378 87.8 1e-11 seq302 87.8 1e-11 >seq390 Length=2793443 Score = 167 bits (184), Expect = 2e-35 Identities = 459/692 (66%), Gaps = 11/692 (2%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||| ||||||||||||| | | |||| ||| || || | | | |||| || Sbjct 1664307 ACTGCTTCTGAACGTGCTAAGTGTACCCTTTTTTCCAGCACCCAGGCCAGTATTGAGATT 1664366 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||| || | |||||||||||| | |||| |||| || || |||||||||| Sbjct 1664367 GATTTGCTCTATGAAGGAATTGACTTCTATACCTTTATCACCCATGCCCAATTTGAAGAA 1664426 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | |||||| || || || | || || || || |||| | ||| | Sbjct 1664427 CTGAATTCTGACCTTTTCCATGGCACCCTGGACCCTGTAGAGAAAGTCCCGTAGGATGCG 1664486 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTC-AACAAGAATTCC 475734 || |||||||| || || ||||||| ||||| || || || ||||| | | | | ||| Sbjct 1664487 AAGCTTGACAAGTCCCAGATCCATGATATTGTCCTGGTGGGTGGTTCTACCCATATTTCT 1664546 Query 475735 AAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGG-TAAAAAGTTAAATGAAAGTGTA 475792 || | | ||| || | | | || | | |||||||| |||||||| ||| | || | Sbjct 1664547 AAGATTCAGA-AACTTC-TACAGGACTTCTTTAATGGAAAAAAAGTTGAATAAGAGCATC 1664604 Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 || |||||||| |||||||| | ||| || |||||||| ||||| || |||| || | Sbjct 1664605 AACCCTGATGAGGCTGTTGCTTTTGGTGCAGCTGTCCAGGCAGCCATCCTATCTGG--AG 1664662 Query 475853 TCAGACGAGAAACTAAATAATATTGTACT--TGTT-GACGTAACTCCACTTTCATTAGGT 475909 || | |||| | || ||| | || |||| | || ||||| |||| | || Sbjct 1664663 ACAAATCTGAAAATGTTCAAGATT-TGCTGCTGTTAAATGTTACTCCTCTTTTCCTTGGC 1664721 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 | ||||| | ||| || || |||||| || ||| | |||||| | || | | Sbjct 1664722 ATGGAAACTGCTGGCGGAATCATGACTGCCCTCATTAAGCACAATACTACCATTCTTACC 1664781 Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATC 476029 || | || | || | || || |||| ||| || | ||||| ||| || | Sbjct 1664782 AAGCAGACACAGACCTTCACTACCTACTCTGCTAACCAGTCTGCTGTACTCATTCAGGTT 1664841 Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 | ||||||||| | | | || ||||| ||| ||||| | ||| | || | Sbjct 1664842 TATGAAGGTGAGTGGGCCATGATCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCATA 1664901 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || | |||||||| || || || |||||||| |||||| ||||||||||||| ||||| Sbjct 1664902 GGCGTACCTCCTGCACCTAGTGGTGTTCCTCAGATTGAAATTACTTTTGATATCGATGCT 1664961 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 1664962 AATGGCATCCTCAATGTCTCTGCTGTGGATAA 1664993 Score = 138 bits (152), Expect = 7e-27 Identities = 394/599 (66%), Gaps = 15/599 (3%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || ||| |||||| | ||| | || || | | Sbjct 1663530 TGCAGTTGGCATTGATCTCGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCATAGAGA 1663589 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| |||||||||||||| || | || || |||| | ||| ||||| | ||||| Sbjct 1663590 AGTGGAAATAATTGCCAACGATTAGGGAAACCGAACCGCGCCAAGTTATGTGGCCTTTAC 1663649 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| | || || | || || ||| |||| || |||||| ||| || || || Sbjct 1663650 TGATATGGAGCAATTGATAGGTGATCCTGCAAAGAATCAAGTGGCAATGAACCCCACCAA 1663709 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 ||| || |||| | ||| | ||||||| | || ||||||||||| || | | || Sbjct 1663710 CACTGCTTCTGATACCAAACGCCTGATTGGACATAGATTTGATGATACTGTTGCCTAGTC 1663769 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAA 474625 ||||| | ||| |||| || |||| | ||| || ||| | || | | || | Sbjct 1663770 TGATACGAAGCATCGGCCCTTCCTGGTGGTGAATAATGCTGGCAGGCCCAAGGTCAAGTA 1663829 Query 474626 GCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||||| | || || || ||| || | || || | | || || |||||||| Sbjct 1663830 G-AATACAAG--GGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCGTCTATGGTTTTG 1663886 Query 474686 GCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAAT 474744 | || ||||| | | || | || ||||| |||| | || |||| | || Sbjct 1663887 ACAAAGATGAAGGATATTGCAGAAGCCTACCTTGG-GAAGACCATTACAAATGCCATCAT 1663945 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 || || || || || || ||||| ||||| | || || ||||||||||| |||| || Sbjct 1663946 GACAGTACCTGCTTACTTCAATGACTCTCAGTGGCAGGCTACTAAAGATGCTGGAATTAT 1664005 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| ||||| ||||| | ||||| ||||| ||||| | || || |||||||||| Sbjct 1664006 TGCTGGTCTCAATGTACCTAGAATTATCAATGAGCCAACTTCTGCTGCTATTGCTTATGG 1664065 Query 474865 TCTTGATAAGAATTCTG----ACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 | || || || || ||||| |||||| | |||||||| | |||||| Sbjct 1664066 CTTAGACAAAAAGGTTGGAGCTCAAAG----AAATGTGCTGATCTTTGACTTGGGAGGT 1664120 >seq206 Length=3934454 Score = 149 bits (164), Expect = 4e-30 Identities = 367/548 (67%), Gaps = 14/548 (3%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||||| || || || || |||||| | ||| | || ||| ||| | | Sbjct 3859739 TTGGCATTGATTTTGGCACCACCTAGTCTTGTGTGGGTGTCTTCCAGCATGAGAAAATGG 3859680 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTG-AA 474451 |||||||||| ||||| || || || |||| || |||| ||||| ||||||| || Sbjct 3859679 AAATAATTGCTAATGATCAGGGAAACTGAACTACTCCATGTTATGTCAACTTTACTGAAA 3859620 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || |||||| | || | |||| | || |||||| ||||| || || ||| ||| Sbjct 3859619 ACCGAACATTTGATCAGTAATGCCACAAAGAATCAAGTTGCATTGAACCCCACTAACACT 3859560 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||||||||| ||| | ||||||| ||| |||||| || | | | |||||| ||| Sbjct 3859559 GTTTTTGATGCCAAACGCCTGATTGGATGTAGATTTGATAATGCTATTTTCCAATTTGAA 3859500 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA-- 474629 |||| ||||| || || | |||||| |||| || ||||| || | | ||| || Sbjct 3859499 ATGCAGCATTGTCCCTTCATGGTGATGAATGATGTTGGTAGGCCCAAAGTCTAAGTAAAG 3859440 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 |||| | | || || ||| || | || || | | || || | |||| | | Sbjct 3859439 TACAAG--GAAGAGACAAAAAGTTTCTATCCAGAGGAGGTATCGTCTA---TTTTGACAA 3859385 Query 474690 AAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 | ||||| | | ||| | | || ||| || |||| || || |||| | || || Sbjct 3859384 AGATGAAGGATATCGCAAAAGCCTA-CTTTGAGAAGACTGTTACAAATGCTATCATCACA 3859326 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || ||||| ||||| |||| | || |||||||| | || | | Sbjct 3859325 GTACCTGCTTACTTCAATGACTCTCAGTGTCAGGTTACCAAAGATGCTG---AAACTACT 3859269 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 |||||||| | | | || || |||| ||||| || || || ||||||| || | Sbjct 3859268 GGTCTTAACATACTTAGAATCATCAATG-GCCAACTGCTGCTGCTATTGCTTACGGCTTA 3859210 Query 474869 GATAAGAA 474876 ||||| || Sbjct 3859209 GATAAAAA 3859202 >seq502 Length=1078598 Score = 120 bits (132), Expect = 2e-21 Identities = 324/489 (66%), Gaps = 14/489 (3%) Strand=Plus/Minus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 |||||||| ||||| || | | | ||||||||||| | || | ||||| ||||| Sbjct 64026 GAAGATGGAATTTTCGAAGTGAAATCTACAGCTGGAGACACCCACTTAGGTGGAGAAGAC 63967 Query 475400 TTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGT 475455 ||||| || || | || | ||| | | ||| ||| || ||| | || |||| || Sbjct 63966 TTTGACAACCGAATGGTCAACCAT--TTTATTGCAGAGTTTAAGCGCAAGCATAAGAAGG 63909 Query 475456 TGATCTTTCAACATCTGCTAAAG--CATTAAGACGTCTTAGAACTGCTTGTGAACGTGCT 475513 ||| | | | | |||| | | | ||||| | |||||||| ||||||||| Sbjct 63908 ACATCAGTGAGAA----CAAAAGGGCTGTCCGTCGTCTCCGCACTGCTTGCGAACGTGCT 63853 Query 475514 AAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGA 475573 ||||| | |||||||| ||| || | | | |||| ||||||| || | ||||||| Sbjct 63852 AAGCGTACCCTTTCTTCCAGTACCCAGGCCAGTATTGAGATTGATTCACTCTATGAAGGA 63793 Query 475574 ATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTT 475633 || || | |||| ||| || | || ||||||||| | | |||| || || Sbjct 63792 ATCGACTTCTATACCTCTATCACCCGTGCCCGATTTGAAGAATTGAATGCTGACCTTTTC 63733 Query 475634 AGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAA 475693 | || | || || || ||| ||| || | ||| | || || ||||| || ||| Sbjct 63732 CGTGGCACCCTGGACCCTGTAGAAAAAGCCCTTCGGGATGCGAAGCTCGACAAGTCCCAA 63673 Query 475694 GTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTT 475753 |||| || |||||||| || || ||||| || | || || || || ||||| | Sbjct 63672 ATCCACGATATTGTTCTGGTGGGTGGTTCTACCCGTATCCCTAAGAT-TCAGAAACTTCT 63614 Query 475754 TCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGC 475812 || | | || ||||| ||| |||| ||| | ||| | || |||||||| ||||| || Sbjct 63613 ACAGGACTTCTTCAATGGAAAAGAGTTGAATAAGAGTATCAACCCTGATGAGGCTGTCGC 63554 Query 475813 ATATGGAGC 475821 ||||| || Sbjct 63553 TTATGGTGC 63545 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| |||||| | ||| | || ||| || || ||||| || | Sbjct 62851 ACCAAGGATAACAACCTACTTGGCAAGTTTGAGCTCACAGGCATACCCCCTGCCCCTCGT 62792 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||| ||||| |||||||| |||||||| || Sbjct 62791 GGTGTTCCTCAGATTGAAGTCACTTTTGATATCGATGCTAATGGTATCCTTAATGTCTCT 62732 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 62731 GCTGTGGATAA 62721 Score = 96.9 bits (106), Expect = 2e-14 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || ||| |||||| | ||| | || | || || Sbjct 65328 TGCAGTTGGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCACGGAAA 65269 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| |||||||||||||| || || || || |||| || ||| ||||| ||||||| Sbjct 65268 AGTGGAAATAATTGCCAACGATCAGGGAAACCGAACTACTCCAAGTTATGTGGCTTTTAC 65209 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 ||| || || | | || || |||||||| || |||||| |||| Sbjct 65208 TGATACGGAGCGATTGATCGGTGATGCTGCAAAGAATCAAGTTGCA 65163 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || || || || || ||||| ||||| || || || || ||||||| Sbjct 64338 ATGCTGTGGTCACAGTACCTGCTTACTTCAATGACTCTCAGCGGCAGGCTACCAAAGATG 64279 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| ||||| ||||| | | ||||| ||||| ||||| || || || Sbjct 64278 CTGGAACTATTGCTGGTCTCAATGTACTTAGAATTATCAATGAGCCAACTGCTGCTGCTA 64219 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 ||||||||||| | || || || Sbjct 64218 TTGCTTATGGTTTAGACAAAAA 64197 >seq378 Length=1010976 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || |||||||| || |||||||||||||| || ||||| || ||||| || ||||| Sbjct 679757 GGAATCCCTCCTGCACCTAGAGGAGTTCCTCAGATCGAAGTGACCTTTGACATCGATGCC 679816 Query 476150 AATGGTATTCTTAATGTTACTGC 476172 ||||||||||| ||||| || || Sbjct 679817 AATGGTATTCTCAATGTAACAGC 679839 >seq302 Length=4907021 Score = 87.8 bits (96), Expect = 1e-11 Identities = 100/128 (78%), Gaps = 6/128 (5%) Strand=Plus/Plus Query 480564 ACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTT-ATCT 480620 ||||||||||| || ||| |||| ||| | ||||||| | || | ||| |||| Sbjct 2002060 ACAAGATGAAGAGTGGACTC-CTTTTGAATGCTG-TAATCAGACA-AGATATGTCCATCT 2002116 Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680 || |||||||| |||||||| ||||| | ||| |||| |||||||||||||||||| || Sbjct 2002117 TCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTCCTTATCC 2002176 Query 480681 TGAATCTT 480688 || ||||| Sbjct 2002177 TGGATCTT 2002184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266630953211912