Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq324 318 7e-82 seq1 170 2e-37 seq58 113 5e-20 >seq324 Length=2060163 Score = 318 bits (352), Expect = 7e-82 Identities = 671/993 (68%), Gaps = 17/993 (2%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| ||| || || |||| |||||||| || || | ||| | |||| ||| || || Sbjct 171516 TGTCTCAGGTGCTCATCCAAACATTGGATAGCAAAGAGGTCGATGTCTGTGTCAAACTTG 171575 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| || || || ||||||| || ||| || | || || || Sbjct 171576 TTGGCAAATAAGTGGTGC---TTGTGCAGCATCCAGTTCAAGTCACCTGCTCCAAAAACA 171632 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || |||||||||| || || || ||||| || ||||| | || || || | || ||| Sbjct 171633 CACACGGAACGTACATGGACACCATTGCAGGGTGGGTAGGGGGCGCCCTTGGAAACATCA 171692 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| |||||||| || || || ||||||||||| ||||||| Sbjct 171693 CCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGGACATGTCGTAC 171752 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | | ||| | | || || || | || || | ||| | |||||||| || Sbjct 171753 TTAGAGCTTAAGGGCAGTGAGCCTGGGACTTCAGGGATCCTCTGAATAGTGGCCCAGAGA 171812 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406 | || || |||||||| ||||| || | ||| ||||| |||| | |||| || || Sbjct 171813 TACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATT---CTTTCA 171869 Query 160407 CGC---AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || |||| || || || | || || || || || ||||| || || Sbjct 171870 TTCTCTAGCACGTACTCCACATAATTCCTACTGACCACGAAATAGGCACTGCCTGAAAAC 171929 Query 160464 ATCGGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 | ||| | | ||| || || | |||||| || ||||| | || | ||| || Sbjct 171930 AGAGGTGTTTCAAGAGGAGGACGCAT-TTTGTCAGTCCCAGTGTTTGTCAGCTTTCCATT 171988 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 || | | | |||| |||||||| | | || | | |||||| || || || Sbjct 171989 AACAACTGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTTTCTCAGTTTC 172048 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 ||| |||| | || | || || || | | |||| || || ||||| || || | Sbjct 172049 TAGGTTGTTTTCTCCCATTAATGACTTGAGTTTCCTGACAATTTCCAGGTTGGTTTTAAT 172108 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 ||||| || |||| || | ||||||| ||||||||| | || |||| || || Sbjct 172109 AGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATTCTGTAGAG 172168 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 |||| ||| || || | || ||||| || || ||||| || || || || || |||| Sbjct 172169 GTCCTGCATACAGTTGAGGTCGGCCTGGACTCGACTCCATGATGCATATACCACACTCTC 172228 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAG 160819 || | |||||||||||||||||||| |||||| || | || || |||| | |||| Sbjct 172229 CAGCTGACTGGCCACAAAGACGTTATTGAAACAAGATGCAATGCCAATCACCGCAGCCAA 172288 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 |||| | ||| || | ||| |||||| || | |||||| | ||||||||| || Sbjct 172289 AAAGGA-ATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 172345 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||||||||| || | ||| || | ||| || || || ||||| | ||| || || || || Sbjct 172346 GATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTATGGAATATGC 172405 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 ||| |||||||| | ||| || ||| |||| | | || || ||| ||||||| Sbjct 172406 TATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGCTTCTTGAT 172465 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| || |||||| |||||||| ||||| Sbjct 172466 GAAAGAAGTACAATCATTAGTCATGTTTATATA 172498 >seq1 Length=43245305 Score = 170 bits (188), Expect = 2e-37 Identities = 228/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | | |||| || || || || || || || || |||||||||||| || Sbjct 32509870 AGGGTGAGGCAGGCTATTCCTGAGATTTTCCCGGAACCAAAAGTATTGAAGAGGCACTTG 32509929 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || || || || |||| ||| |||||||| || || | |||||| | |||| ||| Sbjct 32509930 TAACACCCCTCATCATCCAAGGTAGTATTCCAGAAGGTAATGGTTGAGCTCTGGAGTCCC 32509989 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | || || ||||| | ||| ||||| | || || || ||||| || ||||||| | Sbjct 32509990 AGCTCAGTGATGTTTATCTTATCCTTATAGGCAGTCTGGACCACAACACCATGGTTCTTG 32510049 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 |||||||| |||||||| || ||||| ||| || || |||||||| || || |||| Sbjct 32510050 CTGAAGGTAGCCATGTTTTCTGGGCTTACGGCTTTGATTTTCTGCCACGTCACAATCAAG 32510109 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | || | ||| || |||| | ||||| || ||||||||||| |||| Sbjct 32510110 ACTTCATGGGAAGTTTCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTCTCTT 32510169 Query 168453 TCATCTTGAGTTACGAC 168469 |||||||| || || || Sbjct 32510170 TCATCTTGGGTCACCAC 32510186 Score = 102 bits (112), Expect = 9e-17 Identities = 146/205 (71%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 167898 GTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTT 167957 || ||||| |||| || || |||| ||| |||||||| || || ||||||||||| Sbjct 32507260 GTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTCCCCACTTGACTCTTG 32507316 Query 167958 GGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTT 168017 || || || || || | | || || ||| ||| || |||||| | ||| | | | Sbjct 32507317 GGGTCCTTGACCTGGAGGACACTGGTGACAGATGTGGTGCCATTGGGGTGTGAGAAAATC 32507376 Query 168018 TTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGT 168077 | || ||||| || || ||||| || | ||||||||| | || ||||| || ||||| Sbjct 32507377 TCAGTACTGTTGTCCATTCCTGACCCAGAGACCTTCCAGGAGATCACAGGGGCTGGTCGG 32507436 Query 168078 GCTGTAGCAGAGCAGGTAATATTTA 168102 || | |||||||| || ||||||| Sbjct 32507437 GCATTGGCAGAGCAAGTGATATTTA 32507461 >seq58 Length=11139283 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 176234 ATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGG 176293 ||| ||| |||| |||| || |||| |||||| | ||||| ||||||| | || ||| Sbjct 9372845 ATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATAAATGAATCTGCTGG 9372904 Query 176294 AATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAA 176353 ||| || |||||||| |||| || || || || | ||| | ||||| | | || | Sbjct 9372905 AATATAATTTTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAG 9372964 Query 176354 TAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAA 176413 || | | ||||| |||||||| |||||| || |||| |||||||||||||| | | Sbjct 9372965 AAAAGCGTTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAG 9373024 Query 176414 ATAGAACTTACA 176425 |||||| || || Sbjct 9373025 ATAGAATTTGCA 9373036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576958773127440