Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq302 109 1e-18 >seq302 Length=4907021 Score = 109 bits (120), Expect = 1e-18 Identities = 179/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 192291 ACTTTTTAGTTTAATAA-TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-T 192348 |||| || |||| | | ||||||| | ||| | || || | ||| | ||| | ||| | Sbjct 2002022 ACTTCTTTCTTTACTTAGTACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCT 2002081 Query 192349 TTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATT 192408 || || || | |||||||| || | || |||| |||| ||| || ||||||||||| Sbjct 2002082 TTTGA-ATGCTGTAATCAGACAAGATATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATA 2002140 Query 192409 AATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT 192468 | ||| || |||| ||| || |||||||| ||||| || || || ||| || | Sbjct 2002141 AGTCTTTGCTGATGAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTGTATCTTCT 2002200 Query 192469 ATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATAAA 192527 || | |||||| | ||| || | ||||||||||| || || ||| ||||| | ||| Sbjct 2002201 ATTGTATCTGAGGGTTCAACCTTGAGAGTAATGGTCTTCCCTCATAAGGGTTTTCACAAA 2002260 Query 192528 TATCTGCATTTTA 192540 |||||||| ||| Sbjct 2002261 AATCTGCATCTTA 2002273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984024722916900