Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq302 95.1 2e-14 >seq302 Length=4907021 Score = 95.1 bits (104), Expect = 2e-14 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 171824 ACTTTTTAGTTT-CATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTT 171882 |||| || ||| | || ||||||| | ||||| || || | ||| | ||| | ||| | Sbjct 2002022 ACTTCTTTCTTTACTTAGTACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCT 2002081 Query 171883 TAGAAATATTATAATCTGATAAAGATC-GTTCGTCATCCAATTGTTTACCAGCAAAAATT 171941 | ||| | ||||| || || ||| || | || |||| ||| || |||||||| || Sbjct 2002082 TTTGAATGCTGTAATCAGACAA-GATATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATA 2002140 Query 171942 AATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT 172001 | ||| || || | ||| || |||||||| ||||| || || || ||| || | Sbjct 2002141 AGTCTTTGCTGATGAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTGTATCTTCT 2002200 Query 172002 ATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATGAA 172060 || |||||||| | ||| || | ||||||||||| || || ||| ||||| | || Sbjct 2002201 ATTGTATCTGAGGGTTCAACCTTGAGAGTAATGGTCTTCCCTCATAAGGGTTTTCACAAA 2002260 Query 172061 TATCTGCATTTTA 172073 |||||||| ||| Sbjct 2002261 AATCTGCATCTTA 2002273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904727625265200