Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq302 111 1e-19 seq391 104 2e-17 seq149 102 7e-17 seq7 100 3e-16 seq44 98.7 9e-16 seq12 91.5 1e-13 >seq302 Length=4907021 Score = 111 bits (122), Expect = 1e-19 Identities = 163/227 (72%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 24695 ATTGATACGATGCAGATCTTTATTAAAACGCTAACC-GGTAAAACTATTACGCTCGAAGT 24753 |||| || ||||||||| ||| | ||||| || | || || || ||||| ||| | || Sbjct 2002278 ATTGCTAAGATGCAGATTTTTGTGAAAACCCTTATGAGGGAAGACCATTACTCTCAAGGT 2002219 Query 24754 AGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACC 24813 ||| || | || ||| ||||| ||| |||||||| || || |||||||| || Sbjct 2002218 TGAACCCTCAGATACAATAGAAGATACAAAGGCCAAGATCCAGGATAAGGAAGGAATTCC 2002159 Query 24814 TCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAA-CATGT 24872 ||| |||| ||| | | |||||||| || || || ||||| ||| || | | | ||| Sbjct 2002158 TCCTCATCAGCAAAGACTTATCTTTGCTGGCAAGCAACTGGAAGATG-GACATATCTTGT 2002100 Query 24873 CAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 | ||||| | |||||||||||| || || || || | |||||| || Sbjct 2002099 CTGATTACAGCATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 2002053 >seq391 Length=1629883 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| || ||||| || || | || || || || ||| || | Sbjct 1120464 GATGCAGATTTTTGTGAAAACCCTTACCGGGAAGTCTTTCACTCTTGAGGTTGAACCCTC 1120523 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | ||| |||||| ||||| |||||||| || || ||||||| ||||| ||||| Sbjct 1120524 GGTTACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAACTCCTCCTGATCA 1120583 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||| |||||| | || || ||||| || | | | |||| || || | Sbjct 1120584 GCAAAGACTGACCTTTGCTGACAAGCAACTGGAAGACGGACGTACCTTGTCTGACTACAG 1120643 Query 24883 CATTCAAAAGGAATCGACAC 24902 |||||||||||| || |||| Sbjct 1120644 CATTCAAAAGGAGTCCACAC 1120663 >seq149 Length=3750918 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || | || || ||||| || ||| || | Sbjct 2394109 GATGCAGATTTTCGTGAAAACCCTTACAGGGAAGATCATCACTCTCGAGGTTGAACCCTC 2394050 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| | || |||| ||| ||||| ||||| Sbjct 2394049 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGAAATTCCTCCTGATCA 2393990 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||| |||||| || || || ||||| ||| | | |||| || || || Sbjct 2393989 GCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTACAA 2393930 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 |||||||||| | || || || || Sbjct 2393929 CATTCAAAAGTAGTCCACGCTTCA 2393906 >seq7 Length=17524079 Score = 100 bits (110), Expect = 3e-16 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || | ||||| || | || || ||||| | |||| || ||||| | Sbjct 1247926 GATGCAAATTTTCGTGAAAACCCTTATAGGGAAGACTATCATTCTCGTGGTTGAAGCTTC 1247867 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | ||| ||||| ||||| |||||||| || || |||||||| ||| | ||||| Sbjct 1247866 AGTTACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTGATCA 1247807 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| |||||| || || || ||||| ||| | | | | |||| || || || Sbjct 1247806 GCA--GATTGACCTTTGCTGGCAAGCAACTGGAAGATGGGCGTACCTTGTCTGACTACAA 1247749 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||| || || || || | | |||| || Sbjct 1247748 CATTCAAAAGGAGTCCACTCTTCATGTTGCGTTGAGA 1247712 >seq44 Length=10323257 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || ||||| ||| ||| Sbjct 7626787 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 7626728 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 7626727 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAG 7626668 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||| ||| | | | || ||||| ||| Sbjct 7626667 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 7626608 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || ||||| || ||| |||| Sbjct 7626607 ATTCAGAAAGAGTCGACCCTGCACCTGGT 7626579 >seq12 Length=16976894 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || || | || || || || || | ||| || | ||| Sbjct 6395596 GATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCAGCCCAG 6395655 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||| || | ||||||||| || || || || || || || Sbjct 6395656 TGACACCATCGAAAACGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCACCTGACCA 6395715 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||| |||||||| |||||||||||| || | | ||||| ||||| Sbjct 6395716 GCAGCGTCTGAGTTTTGCCGGCAAACAGCTGGAGAATGGCCGCACTCCCTCAGACTATAA 6395775 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 || || || || || || || ||||||||| | || || | || ||| | |||||| Sbjct 6395776 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCTACGTCTGTGGGGTGGCATCATTGAGCC 6395835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449694617450320