Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq456 125 5e-24 seq44 114 8e-21 seq12 113 3e-20 seq1 93.3 3e-14 seq404 91.5 1e-13 seq102 86.0 4e-12 seq14 86.0 4e-12 >seq456 Length=605306 Score = 125 bits (138), Expect = 5e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||||||||||| | |||| ||| ||||| ||||| ||||| || Sbjct 383421 CCTCCCCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 383362 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| ||||||||||| |||||||| | |||||||| | || Sbjct 383361 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 383302 Query 34871 ACCCCCTCCTTGTC 34884 | ||||||||||| Sbjct 383301 ATGCCCTCCTTGTC 383288 >seq44 Length=10323257 Score = 114 bits (126), Expect = 8e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||| ||||||||||| || || || Sbjct 7626561 CCACCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 7626620 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | ||||||||| | || Sbjct 7626621 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 7626680 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | || || || || || || || | ||| ||| || | Sbjct 7626681 ATGCCTTCCTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGTTCCA 7626738 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 7626739 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | | |||||| || | ||| ||| ||||||||||| || || || Sbjct 7626789 CCACCCCTCAGACGAAAGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 7626848 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 7626849 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 7626908 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | || || || || || || || | ||| | | ||| | Sbjct 7626909 ATACCTTCCTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTTGGCTCCA 7626966 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| || ||||| ||||| Sbjct 7626967 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 7627015 >seq12 Length=16976894 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||| ||||| || |||||||| || | |||| ||| Sbjct 6395808 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTC 6395749 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || ||||| || |||| || |||||||| | || | ||||||||||| Sbjct 6395748 TCCAGCTGTTTGCCGGCAAAACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 6395689 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | |||| ||||||| | | || | ||| ||| || ||| || || |||||| Sbjct 6395688 TGGGTTTTAGCTTTGACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTC 6395629 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||| | |||||||| |||||||| ||||| Sbjct 6395628 TTGCCCATCAGGGTCTTCACAAAGATTTGCAT 6395597 >seq1 Length=43245305 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTC--AACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||||| | | ||||||||||| | |||| ||| ||||||||||| |||| | Sbjct 14029120 CCTCCCCTCTGAGACGGAGGACCAGGTGCAGGGTGAACTCTTTCTGAATGTTGTAGTTGG 14029061 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 | ||| | || |||| ||||| ||||||||||| |||||||| | |||||||| Sbjct 14029060 ACAGGACGTGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTC 14029006 >seq404 Length=3166660 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||| |||| || |||||| | || || | || |||| Sbjct 1028031 AGCACCAGGTGCAGGGTGGACTCTTTCTCGATATTATAGACTGAGAGAGTTCGGCCATCC 1028090 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||| || | || | || ||||| || ||| || | || | ||||||||||| Sbjct 1028091 GCCACCTGTTCGCCCACAAAAATCAGACGATGCCAGTAAGGTGGGATGCCCTCCTTGTCT 1028150 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || |||| | | | | ||| || |||||| |||| || |||||| Sbjct 1028151 TGGATTTTAGCTTCGACGTTTTCAGTGGTGTCACTGAGCTCGACCTCAAGTGTGATGGTC 1028210 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| |||||||| |||||||||||| || Sbjct 1028211 TTGCCCGTCAGGGTCTTCACAAAGATCTGCGTG 1028243 >seq102 Length=6558185 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||| ||||||||||| ||||| || || |||| | || Sbjct 2020072 AGCACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCC 2020131 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || || || ||||| | ||| |||| || || | || |||||||| Sbjct 2020132 TCCAGCTGTTTGCCCGCAAAAATCAGACACTGCAGGTCATGTGGGATGCCTTCCTTGTCT 2020191 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 ||||| ||||||| | | | | | ||| |||||| | || |||||| Sbjct 2020192 CGGATTTTAGCTTTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGTAATGGTC 2020251 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||| | || ||||| || ||||| ||||| Sbjct 2020252 TTGCCCATCAGTGTCTTCACGAAGATTTGCAT 2020283 >seq14 Length=16290508 Score = 86.0 bits (94), Expect = 4e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 34796 ATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGT 34855 || |||||||| || | |||| ||| ||||| || | || || || || || || Sbjct 4376034 ATATTATAGTCTGAAAAAGTGCGGCCATTCTCCAGCTGTTCGCCTGCAAAAATTAGACGC 4376093 Query 34856 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT 34915 |||||||| | | | ||||||||||| | ||||| ||||||| | | | | Sbjct 4376094 TGCTGGTCAGGTGTGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTTTCAGTGGTA 4376153 Query 34916 TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 ||| ||| |||||| || | || |||||||||||||| || |||| ||||| || ||| Sbjct 4376154 TCACTGGGCTCGACCTCGAGTGTGATGGTCTTTCCCGTCAGAATCTTGACAAACATTTGC 4376213 Query 34976 AT 34977 || Sbjct 4376214 AT 4376215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325549529162186