Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05]
36,094 sequences; 2,198,284,804 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq149 104 2e-17
seq391 95.1 9e-15
seq302 95.1 9e-15
seq7 87.8 1e-12
seq82 84.2 2e-11
>seq149
Length=3750918
Score = 104 bits (114), Expect = 2e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642
|||||||||||| | ||||||||||| || || | | || || ||| || |||||
Sbjct 2393905 ATGAAGCGTGGACTACTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTTG 2393964
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
||||||||| | ||| |||||||||||| || ||||| | || || | || | ||
Sbjct 2393965 CTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTGGATCTT 2394024
Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
|| ||| |||||| || || || |||| || || ||||| || | || || ||
Sbjct 2394025 GGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGATCTTCCCTGT 2394084
Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789
| |||||| || || |||||||| ||
Sbjct 2394085 AAGGGTTTTCACGAAAATCTGCATCTT 2394111
>seq391
Length=1629883
Score = 95.1 bits (104), Expect = 9e-15
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649
||||| || ||||||||| | || || | | ||| || || || ||||| ||| ||
Sbjct 1120661 GTGGACTCCTTTTGAATGCTGTAGTCAGACAAGGTACGTCCGTCTTCCAGTTGCTTGTCA 1120602
Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709
||| | ||| |||||||||||| || ||| | || || || || || | || ||
Sbjct 1120601 GCAAAGGTCAGTCTTTGCTGATCAGGAGGAGTTCCTTCCTTATCCTGGATCTTGGCCTTT 1120542
Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769
||| |||||| || | || |||| || |||||||| | || || || || | ||||
Sbjct 1120541 ACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAAAGACTTCCCGGTAAGGGTT 1120482
Query 29770 TTAACAAATATCTGCATTTT 29789
|| ||||| |||||||| ||
Sbjct 1120481 TTCACAAAAATCTGCATCTT 1120462
>seq302
Length=4907021
Score = 95.1 bits (104), Expect = 9e-15
Identities = 156/220 (71%), Gaps = 5/220 (2%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||| | ||||| | | | | | |||
Sbjct 2002056 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGATATGTCCATC 2002115
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | || | ||||||||||| || ||||| || || || ||
Sbjct 2002116 TTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTCCTTATC 2002175
Query 29694 TTGTAATTTTTG--TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || || | |||| | ||||| || || || |||| || | ||||| ||
Sbjct 2002176 CTG-GATCTTGGCCTTTG-TATCTTCTATTGTATCTGAGGGTTCAACCTTGAGAGTAATG 2002233
Query 29752 GTTTTGCCAGTTAA-GGTTTTAACAAATATCTGCATTTTA 29790
|| || || ||| |||||| ||||| |||||||| |||
Sbjct 2002234 GTCTTCCCTCATAAGGGTTTTCACAAAAATCTGCATCTTA 2002273
>seq7
Length=17524079
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642
|||||| ||||| || ||||||||||| || || | | ||| || ||| || |||||
Sbjct 1247724 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACGCCCATCTTCCAGTTG 1247783
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
||||||||| | |||||| |||||||| | ||||| || || || || || | ||
Sbjct 1247784 CTTGCCAGCAAAGGTCAATC--TGCTGATCAGAAGGAATTCCTTCCTTATCCTGGATCTT 1247841
Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
|| ||| ||||| || | ||| ||| || | ||| | ||||| || || |
Sbjct 1247842 GGCCTTTACATTTTCTGTTGTAACTGAAGCTTCAACCACGAGAATGATAGTCTTCCCTAT 1247901
Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789
| |||||| || || || ||||| ||
Sbjct 1247902 AAGGGTTTTCACGAAAATTTGCATCTT 1247928
>seq82
Length=9063773
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || ||||| ||||||||| | ||| |||||||||||| || |||||||| || ||
Sbjct 1210027 ATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATACCTTCCTT 1210086
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
| || | || || ||| || || ||||| ||||||| |||||||| ||
Sbjct 1210087 ACCCTGGATCTTGGCCTTTACATTTGCTTTTGTGTCCAGGGGTTCTACCTCAAGAGTGAT 1210146
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | | |||||| ||||| ||| |||| ||
Sbjct 1210147 GGTCTTCCCCATAAGGGTTTTCACAAAAATCCGCATATT 1210185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385049743759254
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |