Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq149 104 2e-17 seq391 95.1 9e-15 seq302 95.1 9e-15 seq7 87.8 1e-12 seq82 84.2 2e-11 >seq149 Length=3750918 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||||||||| | ||||||||||| || || | | || || ||| || ||||| Sbjct 2393905 ATGAAGCGTGGACTACTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTTG 2393964 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | ||| |||||||||||| || ||||| | || || | || | || Sbjct 2393965 CTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTGGATCTT 2394024 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| |||||| || || || |||| || || ||||| || | || || || Sbjct 2394025 GGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGATCTTCCCTGT 2394084 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||| || || |||||||| || Sbjct 2394085 AAGGGTTTTCACGAAAATCTGCATCTT 2394111 >seq391 Length=1629883 Score = 95.1 bits (104), Expect = 9e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| || ||||||||| | || || | | ||| || || || ||||| ||| || Sbjct 1120661 GTGGACTCCTTTTGAATGCTGTAGTCAGACAAGGTACGTCCGTCTTCCAGTTGCTTGTCA 1120602 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | ||| |||||||||||| || ||| | || || || || || | || || Sbjct 1120601 GCAAAGGTCAGTCTTTGCTGATCAGGAGGAGTTCCTTCCTTATCCTGGATCTTGGCCTTT 1120542 Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769 ||| |||||| || | || |||| || |||||||| | || || || || | |||| Sbjct 1120541 ACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAAAGACTTCCCGGTAAGGGTT 1120482 Query 29770 TTAACAAATATCTGCATTTT 29789 || ||||| |||||||| || Sbjct 1120481 TTCACAAAAATCTGCATCTT 1120462 >seq302 Length=4907021 Score = 95.1 bits (104), Expect = 9e-15 Identities = 156/220 (71%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||| | ||||| | | | | | ||| Sbjct 2002056 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGATATGTCCATC 2002115 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | || | ||||||||||| || ||||| || || || || Sbjct 2002116 TTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTCCTTATC 2002175 Query 29694 TTGTAATTTTTG--TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || || | |||| | ||||| || || || |||| || | ||||| || Sbjct 2002176 CTG-GATCTTGGCCTTTG-TATCTTCTATTGTATCTGAGGGTTCAACCTTGAGAGTAATG 2002233 Query 29752 GTTTTGCCAGTTAA-GGTTTTAACAAATATCTGCATTTTA 29790 || || || ||| |||||| ||||| |||||||| ||| Sbjct 2002234 GTCTTCCCTCATAAGGGTTTTCACAAAAATCTGCATCTTA 2002273 >seq7 Length=17524079 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| || || | | ||| || ||| || ||||| Sbjct 1247724 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACGCCCATCTTCCAGTTG 1247783 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||||| |||||||| | ||||| || || || || || | || Sbjct 1247784 CTTGCCAGCAAAGGTCAATC--TGCTGATCAGAAGGAATTCCTTCCTTATCCTGGATCTT 1247841 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| ||||| || | ||| ||| || | ||| | ||||| || || | Sbjct 1247842 GGCCTTTACATTTTCTGTTGTAACTGAAGCTTCAACCACGAGAATGATAGTCTTCCCTAT 1247901 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||| || || || ||||| || Sbjct 1247902 AAGGGTTTTCACGAAAATTTGCATCTT 1247928 >seq82 Length=9063773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| ||||||||| | ||| |||||||||||| || |||||||| || || Sbjct 1210027 ATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATACCTTCCTT 1210086 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 | || | || || ||| || || ||||| ||||||| |||||||| || Sbjct 1210087 ACCCTGGATCTTGGCCTTTACATTTGCTTTTGTGTCCAGGGGTTCTACCTCAAGAGTGAT 1210146 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | | |||||| ||||| ||| |||| || Sbjct 1210147 GGTCTTCCCCATAAGGGTTTTCACAAAAATCCGCATATT 1210185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385049743759254