Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq23 82.4 7e-11 >seq23 Length=11997842 Score = 82.4 bits (90), Expect = 7e-11 Identities = 184/272 (68%), Gaps = 26/272 (10%) Strand=Plus/Minus Query 1476 CGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAACAGCTG 1535 ||||||||| | || | || || | ||| |||| |||| ||||| |||| |||| Sbjct 1050084 CGATACCTGTGTGGCAAACCATGGTGCGAGGGAGCAGGGCC--CGCTTCGGCAGCAGCGT 1050027 Query 1536 CTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAG 1595 || ||| ||||||| |||| || | |||| ||||||||||||| || || Sbjct 1050026 CTGGAGCCAGATGTGTTCGCCATGGTACC-GGGAG--GTATATAAAGGGCCCTCTGCGAG 1049970 Query 1596 GAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT------------CAGAAAAC 1643 ||||| || | || |||||||| | || |||||||| |||||||| Sbjct 1049969 GAGGAACA----ACGTCCCGCCCACAGCAAGATCATTACTCAGCTTTTTTTCCAGAAAAC 1049914 Query 1644 A-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAA---ATGAAG 1699 | ||||||| || ||||| | | || | |||||| | || ||||||| ||| | Sbjct 1049913 ACTTTCAAAATTCTGCCACCCGGGGCTGTGTGAAAGCAGGTCTGGAAGGAAGTGCTGAGG 1049854 Query 1700 TTACCCTTAAGATGGGCAGATG-CTTGACGCA 1730 | ||| | || |||||||||| |||||| || Sbjct 1049853 TCACCTTCAAAGTGGGCAGATGCCTTGACTCA 1049822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438362132692000