Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq44 170 4e-37 seq149 132 9e-26 seq302 122 2e-22 seq391 118 2e-21 seq434 107 4e-18 seq102 98.7 2e-15 seq7 98.7 2e-15 seq126 89.7 1e-12 seq826 86.0 1e-11 >seq44 Length=10323257 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 7626561 CCACCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 7626620 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || || || || ||||| || Sbjct 7626621 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 7626680 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| ||||| || ||| | ||||| ||| Sbjct 7626681 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 7626740 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 7626741 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| | || | ||||| || || |||||||| || || ||||||| Sbjct 7626787 TACCACCCCTCAGACGAAAGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAG 7626846 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || |||||||| || || || || || || | Sbjct 7626847 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 7626906 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || ||||| ||||| || ||| | || || | Sbjct 7626907 GGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCA 7626966 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || |||||||| |||| ||||| || || || |||||| Sbjct 7626967 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 7627016 >seq149 Length=3750918 Score = 132 bits (146), Expect = 9e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || || || ||||| ||| | | || ||||| ||||| || ||||||||| | Sbjct 2393921 TTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGGTC 2393980 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 |||||||| ||||| ||||| ||| ||||||||| || ||||| || ||||||||||| Sbjct 2393981 AGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCT 2394040 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || ||||| ||||| || || | ||| || |||| ||||| | || || || || Sbjct 2394041 ATTGTATCCGAGGGTTCAACCTCGAGAGTGATGATCTTCCCTGTAAGGGTTTTCACGAAA 2394100 Query 82803 ATCTGCAT 82810 |||||||| Sbjct 2394101 ATCTGCAT 2394108 >seq302 Length=4907021 Score = 122 bits (134), Expect = 2e-22 Identities = 150/204 (74%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || | |||||||| | || || ||||| ||||| Sbjct 2002066 TGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGATATGTCCATCTTCCAGTTGC 2002125 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| |||| ||||| |||||||||||||| || ||||| Sbjct 2002126 TTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTCCTTATCCTGGATCTTG 2002185 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT-GT 82786 || ||| || ||| || ||||| ||||| || | | ||| || ||||| ||| | Sbjct 2002186 GCCTTTGTATCTTCTATTGTATCTGAGGGTTCAACCTTGAGAGTAATGGTCTTCCCTCAT 2002245 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| |||||||| Sbjct 2002246 AAGGGTTTTCACAAAAATCTGCAT 2002269 >seq391 Length=1629883 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 |||||||| ||||| || |||||||| | |||||||| ||||| ||||| |||||||| Sbjct 1120622 CCGTCTTCCAGTTGCTTGTCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAGTTCCTTCC 1120563 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| || ||| | ||||| || || | ||| Sbjct 1120562 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTG 1120503 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | | ||| || || | || || ||||| |||||||| Sbjct 1120502 AAAGACTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 1120465 >seq434 Length=2484400 Score = 107 bits (118), Expect = 4e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| || || || || ||||| || ||||| ||| | || ||||| ||||| || Sbjct 1040675 AGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGAGTATATCCATCTTCCAGTTGCTTG 1040734 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||| ||||| || ||||| ||||| ||||| |||||||||||||| || ||||| || Sbjct 1040735 CCAGGAAAGAGCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGCATCTTGGCC 1040794 Query 82731 TTTACATTTTCAATCGTAT 82749 |||| |||||| | |||| Sbjct 1040795 TTTATATTTTCTTTTGTAT 1040813 >seq102 Length=6558185 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | |||||||||| || || || || || ||||||||||| || || ||| Sbjct 4590823 TGGTGGTACTTTGTATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 4590882 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | || || |||||||| | ||| |||||||| ||| Sbjct 4590883 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTGTATCATCACTGTACAATGTTTACATTA 4590942 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | || || || |||| Sbjct 4590943 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAAG 4590979 Score = 93.3 bits (102), Expect = 8e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 82592 CAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCT 82651 || ||| || || ||||||||||| || |||||||| || || || || || ||| | | Sbjct 2020065 CAGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCG 2020124 Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 | ||| || || ||||| || ||||| || || | || | || | || || ||||| Sbjct 2020125 ATTGTCCTCCAGCTGTTTGCCCGCAAAAATCAGACACTGCAGGTCATGTGGGATGCCTTC 2020184 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||| ||| | || || ||||| || || ||| | || | | | || || || | || Sbjct 2020185 CTTGTCTCGGATTTTAGCTTTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGT 2020244 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| ||| ||||| || || || ||||| Sbjct 2020245 AATGGTCTTGCCCATCAGTGTCTTCACGAAGATTTGCAT 2020283 >seq7 Length=17524079 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || || ||||| | | | || ||||| ||||| Sbjct 1247725 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACGCCCATCTTCCAGTTGC 1247784 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||| | | ||| | ||||| | ||| |||||||||||||| || ||||| Sbjct 1247785 TTGCCAGCAAAGGTCAATCT--GCTGATCAGAAGGAATTCCTTCCTTATCCTGGATCTTG 1247842 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| | ||| | || ||| || | | | | || ||||| ||| | Sbjct 1247843 GCCTTTACATTTTCTGTTGTAACTGAAGCTTCAACCACGAGAATGATAGTCTTCCCTATA 1247902 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || || || ||||| Sbjct 1247903 AGGGTTTTCACGAAAATTTGCAT 1247925 >seq126 Length=5094692 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || ||||| ||||| || || ||||| ||||||||||| || ||| | || || || || Sbjct 3443504 CCCTCCTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCG 3443563 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||||||||||| ||||| ||||| |||||||| Sbjct 3443564 AGTGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3443607 >seq826 Length=496929 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/129 (75%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTG-ATCTGGAGGTATTCCTTC 82711 || ||||| ||||| || | ||||||||| | |||||| || ||| | || | | ||| Sbjct 483687 CCATCTTCCAGTTGCTTGCTAGCAAAGATCAATCTTTGCTGCATCAGAAGAAACCCATTC 483628 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 |||||| | |||||| || ||||||||||| || ||||| ||||| ||||| | || Sbjct 483627 CTTATCCTAAATCTTGGCCTTTACATTTTCTATTGTATCCAACGGTTCAACTTCAAGAGC 483568 Query 82772 TATCGTCTT 82780 || ||||| Sbjct 483567 GATGGTCTT 483559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981373149715866