Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq44 140 3e-28 seq141 102 8e-17 seq102 96.9 3e-15 seq11601 93.3 4e-14 seq12 86.0 6e-12 seq852 84.2 2e-11 seq1 84.2 2e-11 seq456 82.4 7e-11 seq453 82.4 7e-11 seq14 82.4 7e-11 >seq44 Length=10323257 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 7626590 GGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 7626648 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||||||||| || |||||| || Sbjct 7626649 CTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCT 7626708 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||| ||||| || | ||||| ||| ||||||||||| | Sbjct 7626709 TCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGG 7626768 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 7626769 TCTTCACGAAGATCTGCAT 7626787 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||||||||| || |||||||| | ||| | | | || || |||| Sbjct 7626812 ATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCT 7626870 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | ||||||| ||||||||| || ||||| |||||||| || ||||| Sbjct 7626871 GCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTATCCTGGATCT 7626930 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| | |||||||| || | ||||| ||| ||||||| Sbjct 7626931 TGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCGG 7626990 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| || ||||| Sbjct 7626991 TCAGGGTCTTCACGAAGATTTGCAT 7627015 >seq141 Length=4710130 Score = 102 bits (112), Expect = 8e-17 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| |||||||| | | | |||| | ||||| ||||| ||||| Sbjct 2829332 GGTGGACTCTTTCTGGATATTGTAGTGGGAGAGTGTGGCCA--TCCTCCAGCTGTTTGCC 2829275 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| |||| || ||||||||||| || ||||||| |||| || ||| ||| || | Sbjct 2829274 CGCAAAAATCAGACGCTGCTGGTCAGGTAGGATGCCCTCCTCATCTTGGAT-TTTAGCTT 2829216 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 || | |||| | || ||||||| || |||| |||| ||| ||||||||||| | Sbjct 2829215 TGCCATTCTCAGTGGCATCACTGGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTCAGGG 2829156 Query 133642 TT 133643 || Sbjct 2829155 TT 2829154 >seq102 Length=6558185 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||||||||| || ||||| || | ||| ||| |||||| ||||| |||| Sbjct 2020087 GTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTG--CGATTGTCCTCCAGCTGTTTGC 2020144 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 |||| |||| || | |||| |||| | ||||||||||||||||| ||| ||| || Sbjct 2020145 CCGCAAAAATCAGACACTGCAGGTCATGTGGGATGCCTTCCTTGTCTCGGAT-TTTAGCT 2020203 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||| |||| ||||||| || | | || | ||| ||||| |||| Sbjct 2020204 TTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGTAATGGTCTTGCCCATCAGT 2020263 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| || ||||| Sbjct 2020264 GTCTTCACGAAGATTTGCAT 2020283 >seq11601 Length=6222 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| |||||||| ||| | |||| | ||||| ||||| ||||| Sbjct 4340 GGTGGACTCTTTCTGGATATTGTAGTCGGAGAGTGTGGCC--ATCCTCCAGCTGTTTGCC 4397 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| |||| || | ||||||||| || ||||||| |||| || ||| ||| || | Sbjct 4398 CGCAAAAATAAGACACTGCTGGTCAGGTAGGATGCCCTCCTCATCTTGGAT-TTTAGCTT 4456 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 || | |||| | || ||||||| || |||| ||| ||| |||||||||| Sbjct 4457 TGCCATTCTCAGTGGCATCACTGGGCTCGACCTCGAGTATGATGGTCTTGCCGGTCA 4513 >seq12 Length=16976894 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| ||||| || || ||| | | | || || || Sbjct 6395802 AAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTC-TCCAG 6395744 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| || || | || ||||||||||| || |||||||| |||||||| || Sbjct 6395743 CTGTTTGCCGGCAAAACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC-TTGGG 6395685 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | || | ||||| |||||| || ||| |||| ||| |||| Sbjct 6395684 TTTTAGCTTTGACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTCTTGC 6395625 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || || || || ||||| Sbjct 6395624 CCATCAGGGTCTTCACAAAGATTTGCAT 6395597 >seq852 Length=144798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 16/201 (8%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||||||||||| |||| || || | ||| | ||| || ||||| |||||| Sbjct 60832 GTGGACTCTTTCTTGTTATTTTAGTCTGAGAGAGTGCAGCTGTCTTCCAGCTGTTTGCCC 60773 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || |||| || ||||||||||| || | ||||||||||||||| ||| ||| |||| Sbjct 60772 GCAAAAATCAGACGCTGCTGGTCAGGTGCGATGCCTTCCTTGTCTTGGAT-TTTAGCTT- 60715 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG----GTCAG 133639 || ||||| ||||||| || |||| | || ||| ||| || ||||| Sbjct 60714 ---TG-------GTGTCACTGGGCTCGACTTCGAGTGCGATGGTCTTGACGCAATGTCAG 60665 Query 133640 AGTTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 60664 GCTCTTCACAAAGATCTGCAT 60644 >seq1 Length=43245305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 133467 GACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCG 133526 ||||||||||| |||||||| | | || | | | || || |||||||| || | Sbjct 14029312 GACTCTTTCTGGATATTGTAGTTGGACAGGGAGCGCCCATCTTCCAGCTGCTTTCCGACA 14029253 Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC 133586 | || ||| |||||||| ||| || |||| | |||||| |||||| ||||| Sbjct 14029252 AAGATCGGCCTCTGCTGGTTGGG-GGAATGCTCTTCTTGTCTTGGATCTTGGCCTTGACA 14029194 Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646 | || | |||| | ||| |||||| || | ||||| ||| || ||||||| || || Sbjct 14029193 TTCTTGATGGTGTTGCTGGACTCCACTTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTC 14029134 Query 133647 ACGAAAATCTG 133657 ||||| ||||| Sbjct 14029133 ACGAAGATCTG 14029123 >seq456 Length=605306 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| ||| || ||| | || || |||||||| || Sbjct 383392 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCC 383333 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 || | || |||| ||||||||| || |||||||| |||||||| Sbjct 383332 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 383288 >seq453 Length=1760600 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| |||||||||| || |||| || | ||| | | | ||||| || Sbjct 554602 AAGTGCAGGGTGCACTCTTTCTGGATGGTGTAGTCTGAGAGAGTGTGGCCA-TCCTCCAG 554660 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| || || | || ||||||||||| || |||||||| ||||||| ||| Sbjct 554661 CTGTTTGCCTGCCAAAGTCAGACGCTGCTGGTCAGGTGGGATGCCCGCCTTGTCTTGGAT 554720 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| || ||| ||||| |||||| || || | |||| ||| ||||| Sbjct 554721 TTTACCTTTGGCCTTTTCAGTGGTGTCACTGGGCTGGACATCTAGTGTGATGGTCTTGCC 554780 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || | | ||| ||| |||| Sbjct 554781 CGTCAGGGTCGTCATGAAGATCCGCAT 554807 >seq14 Length=16290508 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 133508 CTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| ||||| | ||| || |||| || ||||||||||| || | |||||| |||||||| Sbjct 4376063 CTCCAGCTGTTCGCCTGCAAAAATTAGACGCTGCTGGTCAGGTGTGATGCCCTCCTTGTC 4376122 Query 133568 GGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGG 133626 ||| ||| || |||| | ||| || || ||||||| || |||| |||| || Sbjct 4376123 TTGGAT-TTTAGCTTTGACGTTTTCAGTGGTATCACTGGGCTCGACCTCGAGTGTGATGG 4376181 Query 133627 TTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || |||||| | || || || || ||||| Sbjct 4376182 TCTTTCCCGTCAGAATCTTGACAAACATTTGCAT 4376215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483202692620560