Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq324 244 1e-59 seq1 194 2e-44 seq58 138 1e-27 seq85 109 6e-19 >seq324 Length=2060163 Score = 244 bits (270), Expect = 1e-59 Identities = 616/932 (66%), Gaps = 17/932 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 ||| || ||||||| || | ||| || | ||| |||| || || | ||| || Sbjct 171505 CCAAGGCTTTATGTCTCAGGTGCTCATCCAAACATTGGATAGCAAAGAGGTCGATGTCTG 171564 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || || | ||| ||| || | || ||||| || | || || | Sbjct 171565 TGTCAAACTTGTTGGCAAATAAGTGGTGC---TTGTGCAGCATCCAGTTCAAGTCACCTG 171621 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || || |||||||| || || || || || |||| || || || |||| || | Sbjct 171622 CTCCAAAAACACACACGGAACGTACATGGACACCATTGCAGGGTGGGTAGGGGGCGCCCT 171681 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| |||||||| || ||||||| || || |||||||||| Sbjct 171682 TGGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGG 171741 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||||||||| | | | |||| | || || || | || | ||||| | || Sbjct 171742 ACATGTCGTACTTAGAGCTTAAGGGCAGTGAGCCTGGGACTTCAGGGATCCTCTGAATAG 171801 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || || || || || | ||||||||| |||| || Sbjct 171802 TGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGA 171861 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | ||| | ||| || || ||| | || | || || || || | Sbjct 171862 TTCTTTCATTCTCTAGCACGTACTCCACATAATTCCTACTGACCACGAAATAGGCACTGC 171921 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | |||||| || |||||| || ||||| | | Sbjct 171922 CTGAAAACAGAGGTGTTTCAAGAGGAGGACGCATTTTGTCAGTCCCAGTGTTTGTCAGCT 171981 Query 162539 TTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 |||| | || || ||| | ||| ||||||| | | ||| ||| | | Sbjct 171982 TTCCATTAACAAC----TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATT 172037 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 | || || ||||| |||| ||| || | ||| || | | || || || || Sbjct 172038 TTCTCAGTTTCTAGGTTGTTTTCTCCCATTAATGACTTGAGTTTCCTGACAATTTCCAGG 172097 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| ||||| || | || || ||||| || | || ||||| | | || Sbjct 172098 TTGGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACTC 172157 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | || ||| || ||||| | |||||| || ||||||||||| |||||||| || || || Sbjct 172158 ATTCTGTAGAGGTCCTGCATACAGTTGAGGTCGGCCTGGACTCGACTCCATGATGCATAT 172217 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||||| | | |||| |||||||| || | |||||| || | || || ||| Sbjct 172218 ACCACACTCTCCAGCTGACTGGCCACAAAGACGTTATTGAAACAAGATGCAATGCCAATC 172277 Query 162835 ACGGCCAGTGAGAA---CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || | ||| | || ||| || | ||| | || || || | ||| || | |||| Sbjct 172278 ACCG-CAGCCAAAAAGGAATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTC 172334 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||||||||| | || || | ||| || || || || || ||||| Sbjct 172335 TGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACT 172394 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| ||||| || ||||| ||||| || Sbjct 172395 ATGGAATATGCTATTGGAAACTCTGCCTCTTC 172426 >seq1 Length=43245305 Score = 194 bits (214), Expect = 2e-44 Identities = 236/322 (73%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || ||||| ||||| ||||||||||| || | | Sbjct 32509865 CAAAGAGGGTGAGGCAGGCTATTCCTGAGATTTTCCCGGAACCAAAAGTATTGAAGAGGC 32509924 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| || || || |||| ||| || ||||| || || | || || | || Sbjct 32509925 ACTTGTAACACCCCTCATCATCCAAGGTAGTATTCCAGAAGGTAATGGTTGAGCTCTGGA 32509984 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || ||||| | | ||||| || | || |||||| |||||||| || | Sbjct 32509985 GTCCCAGCTCAGTGATGTTTATCTTATCCTTATAGGCAGTCTGGACCACAACACCATGGT 32510044 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| || ||||||||||| ||||| || || || ||||||||||| || | Sbjct 32510045 TCTTGCTGAAGGTAGCCATGTTTTCTGGGCTTACGGCTTTGATTTTCTGCCACGTCACAA 32510104 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | |||| |||||||||| ||| |||||||||||||||| | | Sbjct 32510105 TCAAGACTTCATGGGAAGTTTCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCT 32510164 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| ||||| || ||||| Sbjct 32510165 CTCTTTCATCTTGGGTCACCAC 32510186 Score = 129 bits (142), Expect = 7e-25 Identities = 185/256 (72%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| |||| | || |||||||||| ||| | || | ||| |||||||||| Sbjct 32507242 ACAGTTTGCCTGAAGCTGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 32507299 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||||||||| || || || || || || || | || || |||||||| || || Sbjct 32507300 -TCCCCACTTGACTCTTGGGGTCCTTGACCTGGAGGACACTGGTGACAGATGTGGTGCCA 32507358 Query 171623 TTACGATGT-AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || | ||| |||| | | |||||| || || ||||| || || | || ||||| | Sbjct 32507359 TTGGGGTGTGAGAA-AATCTCAGTACTGTTGTCCATTCCTGACCCAGAGACCTTCCAGGA 32507417 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741 || ||||| ||||||| ||| | ||||||||||| || |||| ||||| ||||| Sbjct 32507418 GATCACAGGGGCTGGTCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAGAA 32507477 Query 171742 CTCATAGTGTAATGAC 171757 | ||||| ||| ||| Sbjct 32507478 TTTATAGT-TAAGGAC 32507492 >seq58 Length=11139283 Score = 138 bits (152), Expect = 1e-27 Identities = 376/562 (67%), Gaps = 19/562 (3%) Strand=Plus/Plus Query 176967 TAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGAT 177026 || || | ||| ||||| || | ||| | || | |||||||| || || || || ||| Sbjct 9372873 TAATCTTCCACATGAATAAATGAATCTGCTGGAATATAATTTTCATAGTTTTCCCTAGAT 9372932 Query 177027 GTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATA 177086 | || || || | ||||| | || |||| || || |||||| ||||| || || Sbjct 9372933 GGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCGTTGTAGAGCTTTTCTGTGATG 9372992 Query 177087 TAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATA--GTAGCG 177144 || || |||| | ||||| ||||| | ||||||||||| || | ||||| ||| | Sbjct 9372993 TAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAGAATTTGCAAGTAGATATGGTA--G 9373050 Query 177145 GGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTA 177204 | || || || | ||| | ||| ||||| | | | ||| || ||| || || | Sbjct 9373051 GAATTAAATCTTTATCATTCACATATTCTCCAAACGCTTGCCCATAAGTATGGATTTCAA 9373110 Query 177205 TGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTG 177263 || ||| || | ||| ||| || || || || | || || |||||| || || Sbjct 9373111 TGCTTTTGCTTAACTCATTGTAATA-CTTGACCCTGGCATGCTCAGGGTTCCAGTTACTA 9373169 Query 177264 ACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGATTC-GATACTAATGCAGTGT 177321 || |||||||| || ||||| |||||||| || || ||| | || |||| || | Sbjct 9373170 ACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC----TTCAAACACGAATG-GGTTT 9373223 Query 177322 CT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAAC 177380 | || | ||| | | ||||| ||||| || ||||| |||||||| | || || | Sbjct 9373224 GTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGAGTCGCGGCGATAAGTCAGA 9373283 Query 177381 GTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGGCTGTTACTGGGCGATTCTA 177438 || || ||||| |||| || |||| || |||| ||| ||| | | |||||||| | Sbjct 9373284 GTCAGGTTGAACAGGTGCTCAATACCACTCTTTTG--GGGCGTGTGAGTTGGCGATTCCA 9373341 Query 177439 AGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGAT 177498 | |||||||| ||||| || || || | ||| || | | | ||||| | || ||| Sbjct 9373342 AATTCATCCAAATCCATTTCTGGAACGGTGGCCTAGCCTGCTGAGGTAAATTAGTCAGAT 9373401 Query 177499 CTATACTTATCTCTCTGTGGTG 177520 | ||| || |||| ||| || Sbjct 9373402 CCCAACTGATGTCTCGGTGATG 9373423 >seq85 Length=8752973 Score = 109 bits (120), Expect = 6e-19 Identities = 229/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||||| |||||||| || |||||| ||| | | |||||| Sbjct 4984193 ACCATCTCAGCATTGGTCTTAATAGGAAAGTCTGTTCCGCAGGTATTCAGGAAGTATTTC 4984252 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||||| || | | || || | | |||||| ||||| ||||| || | Sbjct 4984253 CA--TGGCACTGAGCTCTGGAGCAAGTCTTCCATACAGTTAAGATCAGCCTGCACCCTGG 4984310 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| | ||| || | Sbjct 4984311 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCCATGAAGACATTTTGGAAGCATG 4984370 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | ||| ||| ||||| || Sbjct 4984371 AAATAATTGCCTTGACTGCCTCTTTGAAAGTTTCCGGA--GACTTCTCATCCACGTGGAC 4984428 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 || |||| ||||||||||| || | ||||||||| | || || || | || || || Sbjct 4984429 ACAATATATGTTCTGAGGGGCATACAAGGCCCTCAGCAGCCTTTCAAAGTTTTCAATTTT 4984488 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| ||||| || || || ||||| || Sbjct 4984489 CTCATGGACCACCATAGAGTATGCAATAGGGAAGTC 4984524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578171025942400