Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq302 96.9 8e-15 seq44 89.7 1e-12 seq456 84.2 5e-11 seq434 84.2 5e-11 >seq302 Length=4907021 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCAC-AGGAAAAACGATCACTTTGGAAGT 206219 ||||| ||| ||||| ||| ||||| || | ||| || || || ||| | | || Sbjct 2002275 GCTAAGATG---CAGATTTTTGTGAAAACCCTTATGAGGGAAGACCATTACTCTCAAGGT 2002219 Query 206220 GGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTT 206279 ||| || || ||| | ||| |||| ||||| || || || ||||||||| Sbjct 2002218 TGAACCCTCAGATACAATAGAAGATACAAAGGCCAAGATCCAGGATAAGGAAGGAATTCC 2002159 Query 206280 GCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339 || | |||||||||||||| || || ||||| ||||||||||| | ||| | Sbjct 2002158 TCCTCATCAGCAAAGACTTATCTTTGCTGGCAAGCAACTGGAAGATGGACATATCTTGTC 2002099 Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 ||||||| | | || || ||||| |||||||| ||||| ||||||||| Sbjct 2002098 TGATTACAGCATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTT 2002050 >seq44 Length=10323257 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| ||||||||||| |||||| | || Sbjct 7626772 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGTGACACCATTGAGAAT 7626713 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| || || || ||||| Sbjct 7626712 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTCATCTTT 7626653 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| | ||||||||||| Sbjct 7626652 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATTCAGAAAGAGTCG 7626593 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 7626592 ACCCTGCACCTGGT 7626579 >seq456 Length=605306 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || || ||||| |||||||||||| |||||||||| | || || |||| |||||| Sbjct 383315 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 383374 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||||| || || ||||| || Sbjct 383375 ATCCAGAAAGAGTCCACCCTGCACCTGGT 383403 >seq434 Length=2484400 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| | |||||| ||||| || || | ||| ||||||| || ||| Sbjct 1040655 GAAGTCTCAACACAAGATTAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGAGTAT 1040714 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || | |||| |||| ||| ||| Sbjct 1040715 ATCCATCTTCCAGTTGCTTGCCAGGAAAGAGCAGCCTTTGCTGA 1040758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181274261800574