Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1 279 6e-70 seq55 156 5e-33 seq640 134 2e-26 seq35 134 2e-26 seq54 104 3e-17 seq269 102 1e-16 seq553 100 3e-16 >seq1 Length=43245305 Score = 279 bits (308), Expect = 6e-70 Identities = 253/319 (79%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| || | |||||||||||| || || ||| | |||||| ||| Sbjct 32510186 GTGGTGACCCAAGATGAAAGAGAGCTGCTGAACACACCTGCTTCCTTACGATGCTCTCTG 32510127 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | ||||| || || || ||||||| || |||||||||||||| || | ||||| Sbjct 32510126 GAAACTTCCCATGAAGTCTTGATTGTGACGTGGCAGAAAATCAAAGCCGTAAGCCCAGAA 32510067 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| || || ||||| |||| || || ||||||||| | || |||||||| ||| Sbjct 32510066 AACATGGCTACCTTCAGCAAGAACCATGGTGTTGTGGTCCAGACTGCCTATAAGGATAAG 32510007 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||| |||| |||||||| | ||||||||| || || |||||||| ||||| Sbjct 32510006 ATAAACATCACTGAGCTGGGACTCCAGAGCTCAACCATTACCTTCTGGAATACTACCTTG 32509947 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||||||| ||||| |||||||| || || ||||| || ||||||||||| || Sbjct 32509946 GATGATGAGGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAAATCTCAGGA 32509887 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | |||||||||||||||| Sbjct 32509886 ATAGCCTGCCTCACCCTCT 32509868 Score = 215 bits (238), Expect = 6e-51 Identities = 214/277 (77%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || | || | |||||||| ||||| |||||||| || ||||| || Sbjct 32507507 GTACAGCCCACAGTAGTCCTTAACTATAAATTCTTTGAAGACCACCTAAATATCACTTGC 32507448 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 |||||||||||||| || | ||| ||| | |||||| | || ||||||| ||| || Sbjct 32507447 TCTGCCAATGCCCGACCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCAGGAATGGAC 32507388 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| || | || || | ||||| || || ||||| |||||||| ||||| Sbjct 32507387 AACAGTACTGAGATTTTCTCACACCCCAATGGCACCACATCTGTCACCAGTGTCCTCCAG 32507328 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || || |||||||||||||| |||| |||||||| |||||||| ||| ||||||||| Sbjct 32507327 GTCAAGGACCCCAAGAGTCAAGTGGGGAAGGAGGTGATCTGCCAGGTGCTGCACCTGGGG 32507268 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || | ||| ||| ||||||| | ||| |||| Sbjct 32507267 ACTGTGACCAGCTTCAGGCAAACTGTGAACAAAGGTA 32507231 >seq55 Length=9207070 Score = 156 bits (172), Expect = 5e-33 Identities = 134/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||| ||||||||||| | ||||||||| |||||||| Sbjct 7111312 CTTCAGGCCTGTGATGTGTGCGATCATATAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 7111253 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || || |||||||||||| | |||||||||||||||||||| || ||||| || | Sbjct 7111252 GGGCACACCAAGGCCCATGTCCGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATT 7111193 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 |||| || |||||||| ||| | ||||| || || || |||||| Sbjct 7111192 CACCACATAGAACTGGCAAAGGGTATGGCATGGAGGTAGGGCCATG 7111147 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||||||||||||||| ||||| || ||||| |||| || || |||||| Sbjct 7108020 GCCCCAAAGTGCCTCCACTGAAAGCCATAAACTGGGCCCAAATCCCCTTCTTTTCTGCAG 7107961 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 | ||| ||| | || || || || ||||||| | ||| |||||||| | ||||||| Sbjct 7107960 GTGAATCCCAGGCCATTTAGGAAGTCACGGGACCCATTGGCATCCCAGATTCTCACTCCC 7107901 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 || | || || || |||| | ||| | ||| ||| || Sbjct 7107900 TTAGACGACAGTTCTTTAGCATTTGTGCATCCCTGGAAGA 7107861 >seq640 Length=472180 Score = 134 bits (148), Expect = 2e-26 Identities = 128/166 (77%), Gaps = 12/166 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| || |||||| |||||||||||| Sbjct 467304 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAATTTTACCTGGAGGAGGTGA 467245 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| |||| || ||||| ||||| ||| | || || |||| Sbjct 467244 TGCCCCAGGCTGAGAGCCA------------GGGCCCAGACATCAAGAAACACGTGAACT 467197 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATG 178396 | || ||||||||||| ||||| || || ||||||| ||||| || Sbjct 467196 CCCTTGGGGAAAAGCTGAAGACACTCAGGCTGAGGCTTCGGCGCTG 467151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 465100 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 465041 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| |||||||||| || |||| Sbjct 465040 TAGAAGCCTACATGACAATGAAGATGA 465014 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||||||||||||||||||||||||| ||| | || |||||| ||||||| ||||||||| Sbjct 467635 CAAATGAAGGACCAGCTGGACAACATATTGCTGAACGGGTCCTTGCTGGAGGACTTTAAG 467576 Query 178233 G 178233 | Sbjct 467575 G 467575 >seq35 Length=8621394 Score = 134 bits (148), Expect = 2e-26 Identities = 252/369 (68%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | | || || | ||||| |||||| | || |||||||| Sbjct 343728 GTACTCCCTGGTATTTGTCATCGGCCTGGTGGGCAACATTCTGGTGGTTCTGGTCCTCAT 343787 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||||| |||| || |||||||| ||||| ||| ||||||||||| | || Sbjct 343788 GCAGTACAAGAGACTCAAGAGCATGACCAGCATCTACCTCCTCAACCTGGCCATCTCCGA 343847 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | ||||| || ||||| ||||| || | || || | ||| | Sbjct 343848 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATCGAC-TACAGTCTGAAGGA-----GAG 343901 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| || || |||||| |||||| | |||||||| | |||||| |||| Sbjct 343902 CTGGGCATTCGGTAACGGCATGTGCAAGTTTCTCTCGGGCCTTTACTACGTGGGCTTGTA 343961 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || ||||||||| |||| | ||| |||| || || | || |||| Sbjct 343962 CAGCGAGATCTTTTTCATCATCCTGCTGACGATAGACCGGTACCTGGCGATCGTCCACGC 344021 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | || || || ||| || | | || ||| || ||||| || | | ||| Sbjct 344022 CGTGTTTGCCATGCGGGCCCGGACCGTCACCTTTGGGATCATCACCAGCATCATCGTCTG 344081 Query 8970 GATTCTGGC 8978 | | ||||| Sbjct 344082 GGTCCTGGC 344090 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | ||||| | | ||||| ||||| |||| |||| ||| Sbjct 243894 TACTCGCTGGTGTTCATCTTTGGTTTTGTGGGCAACTTGCTGGTCGTCCTCATCCTGATA 243835 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| | ||| | || ||||||| |||||| |||| ||||||||||| | ||| Sbjct 243834 AACTGCAAAAAGCTGAAGAGCATGACCGACATCTACCTGCTCAACCTGGCCATCTCCGAC 243775 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | |||||| |||| || ||| Sbjct 243774 CTGCTTTTCCTCTTCACCATCCCGTTCTGG 243745 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | ||||| | | ||||| ||||| |||| |||| ||| Sbjct 257642 TACTCGCTGGTGTTCATCTTTGGTTTTGTGGGCAACTTGCTGGTCGTCCTCATCCTGATA 257583 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| | ||| | || ||||||| |||||| |||||||||||||||| | ||| Sbjct 257582 AATTGCAAAAAGCTGAAGAGCATGACCGACATCTACCTGTTCAACCTGGCCATCTCCGAC 257523 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCA 8765 ||||| | || | || |||| | |||||||| Sbjct 257522 CTGCTTTTCCTTCTGACTTTCCCAGTGTGGATTCA 257488 Score = 82.4 bits (90), Expect = 9e-11 Identities = 179/265 (68%), Gaps = 10/265 (4%) Strand=Plus/Minus Query 8617 CTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATAAAGTAC 8676 |||||||| | |||| || | ||||| | ||||| | || |||||| ||| ||| Sbjct 317105 CTGGTGTTCGGGGTTGGCCTGGTGGGCAACGTGATGGTGCTGCTGATCCTCACAAAATAC 317046 Query 8677 AAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGCTG 8736 || | ||| |||| || ||||||||| | || |||| |||| ||| |||| |||| Sbjct 317045 AAATGCCTCCGGATTCTGCCCAACATCTACTTGCTCAATTTGGCACTTTCTGACTTGCTC 316986 Query 8737 CTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGG-AACTGGTGGGTGGGA 8795 | | || ||||| || || |||||||||| | | | || | |||||| | || Sbjct 316985 TTTCTGTTGACCCTACCATTCTGGATTCACTACGCCAAGTGGAGCAACTGGGTTTTTGG- 316927 Query 8796 CGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTACAGCGA 8855 |||| |||||||||||| | |||||||| || | | ||||| | || Sbjct 316926 ------CCACAGCATGTGTAAGTTGCTCTCGGGCCTTTATTACCTAGGCTTGTACGGGGA 316873 Query 8856 -AGTCCTGTTTATCATCCTGTTGAC 8879 ||| | || ||||||||| |||| Sbjct 316872 GAGT-TTTTTCATCATCCTGCTGAC 316849 >seq54 Length=8220942 Score = 104 bits (114), Expect = 3e-17 Identities = 136/187 (73%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||| |||||||| |||| ||| || ||||| | ||| | || |||| |||| Sbjct 3751177 AGCTGCATTTTCAGCAGCTCAGTGTGATTCAGGTAAATGTGGGAATCTCCCAAAGTGTAT 3751236 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027 ||||| || || ||| | ||| | | | || | | ||||||||||| || |||||| Sbjct 3751237 ACAAAATCACCTGGCCTCAGGTCCATAATTTGTGTGATCATGTAGGTGAACAAGGAGTAG 3751296 Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087 |||| ||||||||| | || | || | ||| |||| | |||||||||||| |||||| Sbjct 3751297 TTGGCAATGTTGAAGAGCACACACACGTCCACGTCCACTAACCTCTGGTACA-CTGGCAA 3751355 Query 147088 GAGAGCT 147094 || |||| Sbjct 3751356 GACAGCT 3751362 >seq269 Length=1942430 Score = 102 bits (112), Expect = 1e-16 Identities = 195/284 (69%), Gaps = 14/284 (5%) Strand=Plus/Plus Query 146867 TCAAA--ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCA-GCTGAATTTTCAGGG 146923 ||||| || | |||||| ||||| || | || ||| | | | |||| |||||||| Sbjct 1775417 TCAAAGGATTTGGAGCTTTGGGAAAGGCCTTGG-TTCTCGACAAAGCTGCATTTTCAGCA 1775475 Query 146924 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCT 146983 | || ||| || || | | ||| || | || | ||| | |||||| || |||| Sbjct 1775476 GTTCAGTGTGATTCAGAAAAATGTGTGCCTATGTCAAAGAGTGTAAAAAGTCACCTGGCT 1775535 Query 146984 TAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGG 147043 | |||||| || | || ||||| ||||| || || |||| | |||||||| Sbjct 1775536 TCAGGCCGTGCA--------ATCACGTAGG--AGCAGGGAATATTTGGCAACGTTGAAGG 1775585 Query 147044 GGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGG 147103 | || || ||||||||||| | ||||||| |||||||||||| || ||||| | || Sbjct 1775586 GCACACCTAGGCCCATGTCTGCTGACCTCTTGTACAGCTGGCAGGACAGCTCACTGTTTA 1775645 Query 147104 CCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 ||| || | ||||| ||| | || ||| | || || |||||| Sbjct 1775646 CCATATAGAGATGGCAAAGGGTATGACACAGAGGTAGGGCCATG 1775689 >seq553 Length=933399 Score = 100 bits (110), Expect = 3e-16 Identities = 190/280 (68%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||| ||||| | | | | || | ||| || |||||| Sbjct 152149 GCCCCAAAATGCCTCCACTGAAAGCCATTAATTAGGCCTAAGTCCCCTTCTTTTCTGCAG 152090 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | || || ||| |||| | | ||| ||||||| | |||| | Sbjct 152089 GAGAATCCCAGGCCTTCCAGGAAGTCGTAGGACTCATTGGCATCCCAGAATCTCACTTCT 152030 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAA 147462 |||| || || || |||| | ||| | || ||| ||||| |||| |||||||||| Sbjct 152029 TTGGACGACAGTTCTTTAGCATTTGTGTATTCCTCGATAAACCACAGCAACTCCTCCAAA 151970 Query 147463 ACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATAC 147522 || ||| |||| | || | |||| |||||||| || || | || ||||| || Sbjct 151969 ACACCCTTCCAGGATACACGTTTGGGTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAG 151910 Query 147523 CTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCG 147562 | |||| | ||||| ||||| || || ||||||| Sbjct 151909 TGCACCTGCTTGTGGAACACCGACAGGGTCCCGGTGCCCG 151870 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 146910 CTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCAC 146969 ||| |||||||| || || || || || || | ||| || || || | || || || Sbjct 152497 CTGCATTTTCAGTGGTTCAGTGTCATTCAGATAAATGTGTGCATCTCCTAAAGTATGTAC 152438 Query 146970 AAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCT 147029 |||||| || ||||| |||| | | ||| | | |||||||| | |||| |||||||| Sbjct 152437 AAAGTCACCTGGCTTCCGGCCCATGATGTGTGTGATCATGTAGGAGGGCAGGGAGTAGCT 152378 Query 147030 GGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGG 147075 || ||||||||||| | |||||||||| ||| | | ||||||| Sbjct 152377 GGTGATGTTGAAGGGTGCTCCCAGGCCCAGGTCTGCTGGCCTCTGG 152332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583224744801600