Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq44 107 2e-18 seq1 95.1 1e-14 seq7 89.7 5e-13 seq456 84.2 2e-11 >seq44 Length=10323257 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 7626596 CTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 7626655 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || ||||| ||| |||||| ||||| | | Sbjct 7626656 GATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 7626715 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||| |||| ||||| || || || |||| || ||||| Sbjct 7626716 CTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 7626775 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 7626776 GAAGATCTGCAT 7626787 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 7626824 CTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 7626883 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | | ||||| ||| |||||| ||||| | | Sbjct 7626884 GATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATT 7626943 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 7626944 CTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 7627003 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 7627004 GAAGATTTGCATTTTG 7627019 >seq1 Length=43245305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || || ||||| | || || || ||| | || ||||||||||| || |||| Sbjct 14029310 CTCTTTCTGGATATTGTAGTTGGACAGGGAGCGCCCATCTTCCAGCTGCTTTCCGACAAA 14029251 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||| || |||||||| | |||| ||||| |||||| |||||| ||| | | | Sbjct 14029250 GATCGGCCTCTGCTGGT-TGGGGGAATGCTCTTCTTGTCTTGGATCTTGGCCTTGACATT 14029192 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | |||| ||| || ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 14029191 CTTGATGGTGTTGCTGGACTCCACTTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCAC 14029132 Query 35725 AAATATCTG 35733 || ||||| Sbjct 14029131 GAAGATCTG 14029123 >seq7 Length=17524079 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||| | | ||| | || |||||||||||||||||| || | | Sbjct 1247701 CCACCATGAAGTCTCAACGCAACATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1247760 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| ||| | || ||||| ||||| || ||||| |||| |||||| || |||||| Sbjct 1247761 AAGGTACGCCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAA--TCTGCTGATCAGAAGGA 1247818 Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652 | | ||||| ||| |||||| Sbjct 1247819 ATTCCTTCCTTATCCTGGATCTT 1247841 >seq456 Length=605306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 383386 CTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAA 383327 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| || ||||||||| | || | || ||||||||| Sbjct 383326 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 383288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450590213197520