Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq102 91.5 1e-13 seq44 87.8 2e-12 seq302 86.0 6e-12 seq149 82.4 8e-11 seq7 82.4 8e-11 >seq102 Length=6558185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||||| || || |||||||||||||| | ||| || Sbjct 2020066 AGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGA 2020125 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||||||||| |||||||||| || |||| | || | || |||||||| Sbjct 2020126 TTGTCCTCCAGCTGTTTGCCCGCAAAAATCAGACACTGCAGGTCATGTGGGATGCCTTCC 2020185 Query 134616 TTTTCTTGAATTTTTTGTTTGAC 134638 || ||| | ||||| |||||| Sbjct 2020186 TTGTCTCGGATTTTAGCTTTGAC 2020208 >seq44 Length=10323257 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || || || || || || || || || || ||||||||||| || | Sbjct 7626789 CCACCCCTCAGACGAAAGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 7626848 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| || || || Sbjct 7626849 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 7626908 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || || || || | ||||| | ||||| Sbjct 7626909 ATACCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACC 7626968 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || ||||| |||||||||||| Sbjct 7626969 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 7627019 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || || || || || ||||||||||| || | Sbjct 7626561 CCACCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 7626620 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| || || || Sbjct 7626621 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 7626680 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | |||||| Sbjct 7626681 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 7626740 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 7626741 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787 >seq302 Length=4907021 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||| |||| || | ||| | | || Sbjct 2002051 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAA-GATATG 2002109 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| || | | ||||||| || || || ||||| Sbjct 2002110 TCCATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTC 2002169 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || | || | ||| || || | ||| || | |||||| Sbjct 2002170 CTTATCCTGGATCTTGGCCTTTGTATCTTCTATTGTATCTGAGGGTTCAACCTTGAGAGT 2002229 Query 134675 AATGGTTTTACCGGTTAA-AGTTTTAACGAAAATTTGCATTTT 134716 |||||| || || ||| ||||| || ||||| ||||| || Sbjct 2002230 AATGGTCTTCCCTCATAAGGGTTTTCACAAAAATCTGCATCTT 2002272 >seq149 Length=3750918 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134500 GCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGT 134559 |||||| | || |||||||| | |||||||||||||||||| | || | | Sbjct 2393895 GCAACATAGGATGAAGCGTGGACTACTTTTGAATGTTGTAGTCAGACAGAGTACGTCCAT 2393954 Query 134560 CGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTT 134619 | || || || ||||| ||||| ||| | |||||||| || || || |||| || | Sbjct 2393955 CTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTAT 2394014 Query 134620 CTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGG 134679 || || || || || || | ||| || || | ||| || |||||||| ||| Sbjct 2394015 TCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGA 2394074 Query 134680 TTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || || || | ||||| |||||||| ||||| ||| Sbjct 2394075 TCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATCTTG 2394112 >seq7 Length=17524079 Score = 82.4 bits (90), Expect = 8e-11 Identities = 154/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||| | | || || ||||| |||||||||||||||||||| | ||| ||| | Sbjct 1247710 AGTCTCAACGCAACATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-GGTACG 1247768 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| ||||||||| | || || ||||| Sbjct 1247769 CCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAA--TCTGCTGATCAGAAGGAATTCCTTC 1247826 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || ||| | || | ||| || ||||| | Sbjct 1247827 CTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTAACTGAAGCTTCAACCACGAGAAT 1247886 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || | | ||||| |||||||||||||| ||| Sbjct 1247887 GATAGTCTTCCCTATAAGGGTTTTCACGAAAATTTGCATCTTG 1247929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505170376876880